Publications from the Kudryashev Research Lab

Journal Article (15)

1.
Journal Article
Berger, C.; Ravelli, R. B. G.; López-Iglesias, C.; Kudryashev, M.; Diepold, A.; Peters, P. J.: Structure of the Yersinia injectisome in intracellular host cell phagosomes revealed by cryo FIB electron tomography. Journal of Structural Biology 213 (1), 107701 (2021)
2.
Journal Article
Gorgulla, C.; Padmanabha Das, K. M.; Leigh, K. E.; Cespugli, M.; Fischer, P. D.; Wang, Z.-F.; Tesseyre, G.; Pandita, S.; Shnapir, A.; Calderaio, A. et al.; Gechev, M.; Rose, A.; Lewis, N.; Hutcheson, C.; Yaffe, E.; Luxenburg, R.; Herce, H. D.; Durmaz, V.; Halazonetis, T. D.; Fackeldey, K.; Patten, J. J.; Chuprina, A.; Dziuba, I.; Plekhova, A.; Moroz, Y.; Radchenko, D.; Tarkhanova, O.; Yavnyuk, I.; Gruber, C.; Yust, R.; Payne, D.; Näär, A. M.; Namchuk, M. N.; Davey, R. A.; Wagner, G.; Kinney, J.; Arthanari, H.: A multi-pronged approach targeting SARS-CoV-2 proteins using ultra-large virtual screening. iScience 24 (2), 102021 (2021)
3.
Journal Article
Zhang, Y.; Dijkman, P. M.; Zou, R.; Zandl-Lang, M.; Sanchez, R. M.; Eckhardt-Strelau, L.; Köfeler, H.; Vogel, H.; Yuan, S.; Kudryashev, M.: Asymmetric opening of the homopentameric 5-HT3A serotonin receptor in lipid bilayers. Nature Communications 12 (1), 1074 (2021)
4.
Journal Article
Sanchez, R. M.; Zhang, Y.; Chen, W.; Dietrich, L.; Kudryashev, M.: Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - single particle cryo-EM. Nature Communications 11, 3709 (2020)
5.
Journal Article
Chen, W.; Kudryashev, M.: Structure of RyR1 in native membranes. EMBO Reports 21 (5), e49891 (2020)
6.
Journal Article
Faelber, K.; Dietrich, L.; Noel, J. K.; Wollweber, F.; Pfitzner, A.-K.; Mühleip, A.; Sánchez, R.; Kudryashev, M.; Chiaruttini, N.; Lilie, H. et al.; Schlegel, J.; Rosenbaum, E.; Hessenberger, M.; Matthaeus, C.; Kunz, S.; von der Malsburg, A.; Noè, F.; Roux, A.; van der Laan, M.; Kühlbrandt, W.; Daumke, O.: Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1. Nature 571 (7765), pp. 429 - 433 (2019)
7.
Journal Article
Bhaskara, R.; Grumati, P.; Garcia-Pardo, J.; Kalayil, S.; Covarrubias-Pinto, A.; Chen, W.; Kudryashev, M.; Đikić, I.; Hummer, G.: Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy. Nature Communications 10, 2370 (2019)
8.
Journal Article
D'Imprima, E.; Floris, D.; Joppe, M.; Sánchez, R.; Grinninger, M.; Kühlbrandt, W.: Protein denaturation at the air-water interface and how to prevent it. eLife 8, e42747 (2019)
9.
Journal Article
Kehrer, J.; Kuss, C.; Andres-Pons, A.; Reustle, A.; Dahan, N.; Devos, D.; Kudryashev, M.; Beck, M.; Mair, G. R.; Frischknecht, F.: Nuclear Pore Complex Components in the Malaria Parasite Plasmodium Berghei. Scientific Reports 8, 11249 (2018)
10.
Journal Article
D'Imprima, E.; Salzer, R.; Bhaskara, R. M.; Sánchez, R.; Rose, I.; Kirchner, L.; Hummer, G.; Kühlbrandt, W.; Vonck, J.; Averhoff, B.: Cryo-EM structure of the bifunctional secretin complex of Thermus thermophilus. eLife 6, 10.7554/eLife.30483 (2017)
11.
Journal Article
Cyrklaff, M.; Frischknecht, F.; Kudryashev, M.: Functional insights into pathogen biology from 3D electron microscopy. FEMS Microbiology Reviews 41 (6), pp. 828 - 853 (2017)
12.
Journal Article
Wang, J.; Brackmann, M.; Castaño-Díez, D.; Kudryashev, M.; Goldie, K. N.; Maier, T.; Stahlberg, H.; Basler, M.: Cryo-EM structure of the extended type VI secretion system sheath–tube complex. Nature Microbiology 2, pp. 1507 - 1512 (2017)
13.
Journal Article
Devos, S.; Van Putte, W.; Vitse, J.; Van Driessche, G.; Stremersch, S.; Van den Broek, W.; Raemdonck, K.; Braeckmans, K.; Stahlberg, H.; Kudryashev, M. et al.; Savvides, S. N.; Devreese, B.: Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress. Environmental Microbiology 19 (10), pp. 3930 - 3937 (2017)
14.
Journal Article
Castaño-Díez, D.; Kudryashev, M.; Stahlberg, H.: Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms. Journal of Structural Biology 197 (2), pp. 135 - 144 (2017)
15.
Journal Article
Gold, V.; Kudryashev, M.: Recent progress in structure and dynamics of dual-membrane-spanning bacterial nanomachines. Current Opinion in Structural Biology 39, pp. 1 - 7 (2016)

Book Chapter (3)

16.
Book Chapter
Leigh, K. E.; Navarro, P. P.; Scaramuzza, S.; Chen, W.; Zhang, Y.; Castaño-Díez, D.; Kudryashev, M.: Subtomogram averaging from cryo-electron tomograms. In: Methods in Cell Biology, Vol. 152, 1 Ed., pp. 217 - 259 (Ed. Müller-Reichert, T.). Academic Press (2019)
17.
Book Chapter
Sánchez, R.; Mester, R.; Kudryashev, M.: Fast Cross Correlation for Limited Angle Tomographic Data. In: Lecture Notes in Computer Science (LNCS), Vol. 11482, pp. 415 - 426 (Eds. Felsberg, M.; Forssén, P.-E.; Sintorn, I.-M.; Unger, J.). Springer (2019)
18.
Book Chapter
Kudryashev, M.: Resolution in Electron Tomography. In: Biological and Medical Physics, Biomedical Engineering (BIOMEDICAL), pp. 261 - 282 (Ed. Hanson, E.). Springer International Publishing AG 2018, 6330 Cham Switzerland (2018)

Thesis - Master (3)

19.
Thesis - Master
Gebauer, R.: Enrichment of extracellular vesicles with human NMDA receptors for native-like structure determination by cryo-electron tomography. Master, 75 pp., Fachbereich Physik, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2019)
20.
Thesis - Master
Dávila, W. H. S.: Towards structural insights of the voltage-activated potassium channel 1.2 and its interaction with the gating modifier toxin ProTx-I. Master, 75 pp., Institut für Zellbiologie und Neurowissenschaft, Goethe-Universität Frankfurt, Frankfurt am Main (2019)
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