Publications of the Max Planck Institute of Biophysics 1947 – present
Journal Article (3088)
2024
Journal Article
121 (14), e2315568121 (2024)
Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis. PNAS
Journal Article
Structure and internal dynamics of short RNA duplexes determined by a combination of pulsed EPR methods and MD simulations. Angewandte Chemie, International Edition in English, e202402498 (2024)
Journal Article
160, 114111 (2024)
Encoding prior knowledge in ensemble refinement. The Journal of Chemical Physics
Journal Article
Structure and assembly of a bacterial gasdermin pore. Nature (2024)
Journal Article
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. Journal of Molecular Biology, 168546 (2024)
Journal Article
121 (11), e2314199121 (2024)
Mechanism of proton-powered c-ring rotation in a mitochondrial ATP synthase. PNAS
Journal Article
Role of Protonation States in the Stability of Molecular Dynamics Simulations of High-Resolution Membrane Protein Structures. The Journal of Physical Chemistry B (2024)
Journal Article
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature Cell Biology (2024)
Journal Article
Using cryo-EM to understand the assembly pathway of respiratory complex I. Acta Crystallographica Section D: Structural Biology (2024)
Journal Article
55, pp. 207 - 218 (2024)
Time-Resolved EPR Spectroscopy of Channelrhodopsin-2 Helix B Movements. Applied Magnetic Resonance
Journal Article
187 (5), pp. 1296 - 1311.e26 (2024)
Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries. Cell
Journal Article
121 (9), e2318046121 (2024)
Mechanism and cellular function of direct membrane binding by the ESCRT and ERES-associated Ca2+-sensor ALG-2. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
7 (2), pp. 528 - 534 (2024)
Nanoporous Membranes of Densely Packed Carbon Nanotubes Formed by Lipid-Mediated Self-Assembly. ACS applied bio materials
Journal Article
15, 1445 (2024)
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2. Nature Communications
Journal Article
Hierarchical Assembly of Single-Stranded RNA. Journal of Chemical Theory and Computation (2024)
Journal Article
10 (6), eadj8027 (2024)
Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore. Science Advances
Journal Article
The palisade layer of the poxvirus core is composed of flexible A10 trimers. Nature Structural & Molecular Biology (2024)
Journal Article
11, pp. 634 - 641 (2024)
Exploring Rotational Diffusion with Plasmonic Coupling. ACS Photonics
Journal Article
187 (3), pp. 545 - 562 (2024)
Understanding the cell: Future views of structural biology. Cell
Journal Article
19 (2), pp. 226 - 236 (2024)
A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower. Nature Nanotechnology
Journal Article
13, e84617 (2024)
Structure of the two-component S-layer of the archaeon Sulfolobus acidocaldarius. eLife
Journal Article
Intracellular microbial rhodopsin-based optogenetics to control metabolism and cell signaling. Chemical Society Reviews (2024)
Journal Article
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils. Molecular Cell (2024)
Journal Article
12, RP90174 (2024)
Tracing the substrate translocation mechanism in P-glycoprotein. eLife
Journal Article
Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. ACS Chemical Biology (2024)
Journal Article
15 (1), 205 (2024)
VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticity. Nature Communications
Journal Article
15 (1), 65 (2024)
Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins. Nature Communications
Journal Article
Vibrational Study of the Inward Proton Pump Xenorhodopsin NsXeR: Switch Order Determines Vectoriality. Journal of Molecular Biology, 168447 (2024)
Journal Article
29 (1), pp. 64 - 71 (2024)
Promotion of oxidative phosphorylation by complex I-anchored carbonic anhydrases? Trends in Plant Science
Journal Article
31 (1), pp. 150 - 158 (2024)
Structural insights into the iron nitrogenase complex. Nature Structural & Molecular Biology
Journal Article
52 (1), gkad1065, pp. 87 - 100 (2024)
RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy. Nucleic Acids Research 2023
Journal Article
12, RP88836 (2023)
Unveiling the domain-specific and RAS isoform-specific details of BRAF kinase regulation. eLife
Journal Article
31 (2023)
A dual-targeting succinate dehydrogenase and F1Fo-ATP synthase inhibitor rapidly sterilizes replicating and non-replicating Mycobacterium tuberculosis. Cell Chemical Biology
Journal Article
19 (24), pp. 9060 - 9076 (2023)
Molecular Free Energies, Rates, and Mechanisms from Data-Efficient Path Sampling Simulations. Journal of Chemical Theory and Computation
Journal Article
12 (12), pp. 3521 - 3530 (2023)
Machine Learning-Supported Enzyme Engineering toward Improved CO2-Fixation of Glycolyl-CoA Carboxylase. ACS Synthetic Biology
Journal Article
83, pp. 4318 - 4333 (2023)
Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Molecular Cell
Journal Article
19 (23), pp. 8919 - 8929 (2023)
Neighbor List Artifacts in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation
Journal Article
85, 102258 (2023)
Protein condensates as flexible platforms for membrane traffic. Current Opinion in Cell Biology
Journal Article
186 (24), pp. 5411 - 5427.e23 (2023)
The proteomic landscape of synaptic diversity across brain regions and cell types. Cell
Journal Article
14 (1), 7197 (2023)
Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. Nature Communications
Journal Article
39 (44), pp. 15553 - 15562 (2023)
Adsorbing DNA to Mica by Cations: Influence of Valency and Ion Type. Langmuir
Journal Article
Extracting thermodynamic properties from van ’t Hoff plots with emphasis on temperature-sensing ion channels. Temperature (2023)
Journal Article
597, pp. 2728 - 2738 (2023)
Autophagy as a caretaker of nuclear integrity. FEBS Letters
Journal Article
79 (11), pp. 1010 - 1017 (2023)
Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography. Acta Crystallographica Section D: Structural Biology
Journal Article
30 (11), pp. 1686 - 1694 (2023)
Conformational coupling of redox-driven Na+-translocation in Vibrio cholerae NADH:quinone oxidoreductase. Nature Structural & Molecular Biology
Journal Article
30 (11), pp. 1774 - 1785 (2023)
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments. Nature Structural & Molecular Biology
Journal Article
19 (20), pp. 7387 - 7404 (2023)
Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of Chemical Theory and Computation
Journal Article
13, 1519 (2023)
Ethoxylate Polymer-Based 96-Well Screen for Protein Crystallization. Crystals
Journal Article
14, 6543 (2023)
Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR. Nature Communications
Journal Article
145 (40), pp. 21832 - 21840 (2023)
Assessing the Role of R120 in the Gating of Cr ChR2 by Time-Resolved Spectroscopy from Femtoseconds to Seconds. Journal of the American Chemical Society
Journal Article
84, 102368 (2023)
Ubiquitination and cell-autonomous immunity. Current Opinion in Immunology
Journal Article
14, 5979 (2023)
Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II. Nature Communications
Journal Article
12 (10), 1276 (2023)
Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes. Biology
Journal Article
14, 1261180 (2023)
Preparing Arabidopsis thaliana root protoplasts for cryo electron tomography. Frontiers in Plant Science
Journal Article
52 (18), pp. 6497 - 6553 (2023)
Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation. Chemical Society Reviews
Journal Article
108 (3), 035307 (2023)
Efficient generation of random rotation matrices in four dimensions. Physical Review E
Journal Article
91 (9), pp. 1329 - 1340 (2023)
Crystal structure of FAD-independent methylene-tetrahydrofolate reductase from Mycobacterium hassiacum. Proteins: Structure, Function, and Bioinformatics
Journal Article
51 (15), gkad577, pp. 7882 - 7899 (2023)
Histone divergence in trypanosomes results in unique alterations to nucleosome structure. Nucleic Acids Research
Journal Article
33 (16), pp. 3423 - 3435.e5 (2023)
Structure-function analysis suggests that the photoreceptor LITE-1 is a light-activated ion channel. Current biology: CB
Journal Article
3 (3), 100123 (2023)
Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag. Biophysical Reports
Journal Article
95, pp. 11892 - 11900 (2023)
Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics. Analytical Chemistry
Journal Article
120 (34), e2301447120 (2023)
Two conformations of the Tom20 preprotein receptor in the TOM holo complex. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
29 (Supplement\_1), pp. 1937 - 1938 (2023)
Towards Temporal Resolution in Correlative Cryo-electron Tomography. Microscopy and Microanalysis
Journal Article
30, pp. 1119 - 1131 (2023)
Structure of nascent 5S RNPs at the crossroad between ribosome assembly and MDM2-p53 pathways. Nature Structural and Molecular Biology
Journal Article
22 (8), pp. 1809 - 1823 (2023)
Functional characterization of xanthorhodopsin in Salinivibrio socompensis, a novel halophile isolated from modern stromatolites. Photochemical & Photobiological Sciences
Journal Article
19 (8), pp. 992 - 1003 (2023)
Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nature Chemical Biology
Journal Article
20 (12), pp. 1939 - 1948 (2023)
DBlink: dynamic localization microscopy in super spatiotemporal resolution via deep learning. Nature Methods
Journal Article
13, 11523 (2023)
Determining the structure of the bacterial voltage-gated sodium channel NaChBac embedded in liposomes by cryo electron tomography and subtomogram averaging. Scientific Reports
Journal Article
14, 4165 (2023)
Crosstalk between regulatory elements in disordered TRPV4 N-terminus modulates lipid-dependent channel activity. Nature Communications
Journal Article
15 (27), pp. 11647 - 11656 (2023)
Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity. Nanoscale
Journal Article
23, 19 (2023)
Identification and characterization of sugar-regulated promoters in Chaetomium thermophilum. BMC Biotechnology
Journal Article
381 (6653), pp. 70 - 75 (2023)
Translation dynamics in human cells visualized at high resolution reveal cancer drug action. Science
Journal Article
30 (7), pp. 970 - 979 (2023)
Mechanisms of inward transmembrane proton translocation. Nature Structural and Molecular Biology
Journal Article
19 (7), pp. 2146 - 2147 (2023)
FACS-mediated isolation of native autophagic vesicles. Autophagy
Journal Article
A79 (Part 4), pp. 331 - 338 (2023)
Crystal search - feasibility study of a real-time deep learning process for crystallization well images. Acta Crystallographica Section A: Foundations and Advances
Journal Article
17 (13), pp. 12684 - 12692 (2023)
Burst-by-Burst Measurement of Rotational Diffusion at Nanosecond Resolution Reveals Hot-Brownian Motion and Single-Chain Binding. ACS Nano
Journal Article
14, 3683 (2023)
Cyclic di-AMP traps proton-coupled K+ transporters of the KUP family in an inward-occluded conformation. Nature Communications
Journal Article
11 (16), 1592 (2023)
Production of Polyhydroxybutyrate by Genetically Modified Pseudomonas sp. phDV1: A Comparative Study of Utilizing Wine Industry Waste as a Carbon Source. Microorganisms
Journal Article
19, pp. 3406 - 3417 (2023)
Unwrapping NPT Simulations to Calculate Diffusion Coefficients. Journal of Chemical Theory and Computation
Journal Article
14, 3418 (2023)
Co-translational binding of importins to nascent proteins. Nature Communications
Journal Article
618 (7964), pp. 402 - 410 (2023)
Heteromeric clusters of ubiquitinated ER-shaping proteins drive ER-phagy. Nature
Journal Article
618 (7964), pp. 394 - 401 (2023)
Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum. Nature
Journal Article
92, pp. 15 - 41 (2023)
Looping the Genome with SMC Complexes. Annual Review of Biochemistry
Journal Article
9, eadg6689 (2023)
A bacterial tungsten-containing aldehyde oxidoreductase forms an enzymatic decorated protein nanowire. Science Advances
Journal Article
19 (9), pp. 2601 - 2606 (2023)
“Autophagic landscapes: on the paradox of survival through self-degradation” – A science-inspired exhibition. Autophagy
Journal Article
23 (10), pp. 4111 - 4119 (2023)
Anisotropic Friction in a Ligand-Protein Complex. Nano Letters
Journal Article
13, 8270 (2023)
Selecting optimal support grids for super-resolution cryogenic correlated light and electron microscopy. Scientific Reports
Journal Article
30 (5), pp. 499 - 512 (2023)
Selective killing of the human gastric pathogen Helicobacter pylori by mitochondrial respiratory complex I inhibitors. Cell Chemical Biology
Journal Article
6 (2023)
How Membrane Contact Sites Shape the Phagophore. Contact
Journal Article
17 (1), pp. 121 - 127 (2023)
1H, 13C, 15N backbone chemical shift assignments of the extended ARID domain in human AT-rich interactive domain protein 5a (Arid5a). Biomolecular NMR Assignments
Journal Article
6, 88 (2023)
Mirror proteorhodopsins. Communications Chemistry
Journal Article
25 (5), pp. 685 - 698 (2023)
A lysosome membrane regeneration pathway depends on TBC1D15 and autophagic lysosomal reformation proteins. Nature Cell Biology
Journal Article
23 (10), 2200138 (2023)
Insights into the sulfur metabolism of Chlorobaculum tepidum by label-free quantitative proteomics. Proteomics
Journal Article
380 (6647), eadf2018 (2023)
An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science
Journal Article
617 (7959), pp. 162 - 169 (2023)
Visualizing the disordered nuclear transport machinery in situ. Nature
Journal Article
3 (4), pp. 334 - 345 (2023)
Machine-guided path sampling to discover mechanisms of molecular self-organization. Nature Computational Science
Journal Article
204, 106230 (2023)
Purification and characterization of eukaryotic ATP-dependent transporters homologously expressed in Pichia pastoris for structural studies by cryo-electron microscopy. Protein Expression and Purification
Journal Article
1864 (2), 148953 (2023)
Isolation of a novel heterodimeric PSII complex via strep-tagged PsbO. Biochimica et Biophysica Acta, Bioenergetics
Journal Article
616 (7958), pp. 843 - 848 (2023)
The Smc5/6 complex is a DNA loop-extruding motor. Nature