Publications of the Max Planck Institute of Biophysics 1947 – present

Journal Article (51)

2001

Journal Article

Grell, E.; Schick, E.; Lewitzki, E.: Membrane receptor calorimetry: cardiac glycoside interaction with Na,K-ATPase. Thermochimica Acta 380 (2), pp. 245 - 254 (2001)

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Lange, C.; Nett, J. H.; Trumpower, B. L.; Hunte, C.: Specific roles of protein-phospholipid interactions in the yeast cytochrome bc₁ complex structure. EMBO Journal 20 (23), pp. 6591 - 6600 (2001)

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Warkentin, E.; Mamat, B.; Sordel-Klippert, M.; Wicke, M.; Thauer, R. K.; Iwata, M.; Iwata, S.; Ermler, U.; Shima, S.: Structures of F₄₂₀H²:NADP⁺ oxidoreductase with and without its substrates bound. The EMBO Journal 20 (23), pp. 6561 - 6569 (2001)

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Kamberaj, H.; Helms, V.: Monte Carlo simulation of biomolecular systems with BIOMCSIM. Computer Physics Communications 141 (3), pp. 375 - 402 (2001)

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Ruiz, T.; Kopperschläger, G.; Radermacher, M.: The First Three-Dimensional Structure of Phosphofructokinase from Saccharomyces cerevisiae Determined by Electron Microscopy of Single Particles. Journal of Structural Biology 136 (3), pp. 167 - 180 (2001)

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Ganea, C.; Pourcher, T.; Leblanc, G.; Fendler, K.: Evidence for Intraprotein Charge Transfer during the Transport Activity of the Melibiose Permease from Escherichia Coli. Biochemistry 40 (45), pp. 13744 - 13752 (2001)

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Kappl, M.; Nagel, G.; Fendler, K.: Voltage and Ca²⁺ Dependence of Pre–Steady-State Currents of the Na-Ca Exchanger Generated by Ca²⁺ Concentration Jumps. Biophysical Journal 81 (5), pp. 2628 - 2638 (2001)

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Lill, M. A.; Helms, V.: Reaction rates for proton transfer over small barriers and connection to transition state theory. The Journal of Chemical Physics 115 (17), pp. 7985 - 7992 (2001)

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Lill, M. A.; Helms, V.: Molecular dynamics simulation of proton transport with quantum mechanically derived proton hopping rates (Q-HOP MD). The Journal of Chemical Physics 115 (17), pp. 7993 - 8005 (2001)

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Bamberg, E.; Clarke, R.; Fendler, K.: Electrogenic properties of the Na⁺,K⁺-ATPase probed by presteady state and relaxation studies. Journal of Bioenergetics and Biomembranes 33 (5), pp. 401 - 405 (2001)

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Geibel, S.; Friedrich, T.; Ormos, P.; Wood, P. G.; Nagel, G.; Bamberg, E.: The Voltage Dependent Proton Pumping in Bacteriorhodopsin Is Characterized by Optoelectric Behavior. Biophysical Journal 81 (4), p. 2059-2068 (2001)

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Lüpfert, C.; Grell, E.; Pintschovius, V.; Appel, H.-J.; Cornelius, F.; Clarke, R. J.: Rate Limitation of the Na⁺,K⁺-ATPase Pump Cycle. Biophysical Journal 81 (4), pp. 2069 - 2081 (2001)

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Ungar, D.; Barth, A.; Haase, W.; Kauntzinger, A.; Lewitzki, E.; Ruiz, T.; Reiländer, H.; Michel, H.: Analysis of a putative voltage-gated prokaryotic potassium channel. European Journal of Biochemistry 268 (20), pp. 5386 - 5396 (2001)

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Bartoschek, S.; Johansson, M.; Geierstanger, B. H.; Okun, j. G.; Lancaster, C. R. D.; Humpfer, E.; Yu, L.; Yu, C.-A.; Griesinger, C.; Brandt, U.: Three molecules of ubiquinone bind specifically to mitochondrial cytochrome bc₁ complex. The Journal of Biological Chemistry 276 (38), pp. 35231 - 35234 (2001)

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Lee, S. Y.; Hunte, C.; Malaney, S.; Robinson, B. H.: The N-terminus of the Qcr7 protein of the cytochrome bc₁ complex in S. cerevisiae may be involved in facilitating stability of the subcomplex with the Qcr8 Protein and Cytochrome b. Archives of Biochemistry and Biophysics 393 (2), pp. 215 - 221 (2001)

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Arndt, P.; Volk, C.; Gorboulev, V.; Budiman, T.; Popp, C.; Ulzheimer-Teubner, I.; Akhundova, A.; Koppatz, S.; Bamberg, E.; Nagel, G. et al.; Koepsell, H.: Interaction of cations, anions, and weak base quinine with rat renal transporter rOCT2 compared with rOCT1. American Journal of Physiology-Renal Physiology 281 (3), pp. F454 - F468 (2001)

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Hunte, C.: Insights from the structure of the yeast cytochrome bc₁ complex: crystallization of membrane proteins with antibody fragments. FEBS Letters 504 (3), pp. 126 - 132 (2001)

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Lancaster, C. R. D.: Succinate:quinone oxidoreductases – what can we learn from Wolinella succinogenes quinol:fumarate reductase. FEBS Letters 504 (3), pp. 133 - 141 (2001)

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Kannt, A.; Ostermann, T.; Müller, H.; Ruitenberg, M.: Zn²⁺ binding to the cytoplasmic side of Paracoccus denitrificans cytochrome c oxidase selectively uncouples electron transfer and proton translocation. FEBS Letters 503 (2-3), pp. 142 - 146 (2001)

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Watzke, N.; Grewer, C.: The anion conductance of the glutamate transporter EAAC1 depends on the direction of glutamate transport. FEBS Letters 503 (2-3), pp. 121 - 125 (2001)

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Vasilets, L.A.; Darmer, D.; Isenberg, G.; Schwarz, W.: RNA from heart of young and old rats leads to the expression of protein(s) in Xenopus oocytes that alter the transport activity of rat Na⁺,K⁺-ATPases differently. Pflügers Archiv: European Journal of Physiology 443 (1), pp. 84 - 91 (2001)

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Bombarda, E.; Morellet, N.; Cherradi, H.; Spiess, B.; Bouaziz, S.; Grell, E.; Roques, B. P.; Mély, Y.: Determination of the pK_a of the four Zn²⁺-coordinating residues of the distal finger motif of the HIV-1 nucleocapsid protein: Consequences on the binding of Zn²⁺. Journal of Molecular Biology (London) 310 (3), pp. 659 - 672 (2001)

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Radermacher, M.; Ruiz, T.; Wieczorek, H.; Grüber, G.: The Structure of the V₁-ATPase Determined by Three-Dimensional Electron Microscopy of Single Particles. Journal of Structural Biology 135 (1), pp. 26 - 37 (2001)

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Kühlbrandt, W.: Chlorophylls galore. Nature 411 (6840), pp. 897 - 899 (2001)

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Schmid, V. H.R.; Thomé, P.; Rühle, W.; Paulsen, H.; Kühlbrandt, W.; Rogl, H.: Chlorophyll b is involved in long-wavelength spectral properties of light-harvesting complexes LHC I and LHC II. FEBS Letters 499 (1-2), pp. 27 - 31 (2001)

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Buet, P.; Gersch, B.; Grell, E.: Spectral Properties, Cation Selectivity, and Dynamic Efficiency of Fluorescent Alkali Ion Indicators in Aqueous Solution Around Neutral pH. Journal of Fluorescence 11 (2), pp. 79 - 87 (2001)

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Jahn, T.; Dietrich, J.; Andersen, B.; Leidvik, B.; Otter, C.; Briving, C.; Kühlbrandt, W.; Palmgren, M. G.: Large scale expression, purification and 2D crystallization of recombinant plant plasma membrane H⁺-ATPase. Journal of Molecular Biology (London) 309 (2), pp. 465 - 476 (2001)

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Scharff, E. I.; Koepke, J.; Fritzsch, G.; Lücke, C.; Rüterjahns, H.: Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris. Structure 9 (6), pp. 493 - 502 (2001)

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Watzke, N.; Bamberg, E.; Grewer, C.: Early Intermediates in the Transport Cycle of the Neuronal Excitatory Amino Acid Carrier EAAC1. Journal of General Physiology 117 (6), pp. 547 - 562 (2001)

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Zachariae, U.; Lancaster, C. R. D.: Proton uptake associated with the reduction of the primary quinone Q_A influences the binding site of the secondary quinone Q_B in Rhodopseudomonas viridis photosynthetic reaction centers. Biochimica et Biophysica Acta, Bioenergetics 1505 (2-3), pp. 280 - 290 (2001)

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Grabarse, W.; Mahlert, F.; Duin, E. C.; Goubeaud, M.; Shima, S.; Thauer, R. K.; Lamzin, V.; Ermler, U.: On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding. Journal of Molecular Biology (London) 309 (1), pp. 315 - 330 (2001)

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Collinson, I.; Breyton, C.; Duong, F.; Tziatzios, C.; Schubert, D.; Or, E.; Rapoport, T.; Kühlbrandt, W.: Projection structure and oligomeric properties of a bacterial core protein translocase. The EMBO Journal 20 (10), pp. 2462 - 2471 (2001)

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Pusch, M.; Ferrera, L.; Friedrich, T.: Two open states and rate-limiting gating steps revealed by intracellular Na⁺ block of human KCNQ1 and KCNQ1/KCNE1 K⁺ channels. Journal of Physiology 533 (1), pp. 135 - 143 (2001)

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Lebeau, L.; Lach, F.; Vénien-Bryan, C.; Renault, A.; Dietrich, J.; Jahn, T.; Palmgren, M. G.; Kühlbrandt, W.; Mioskowski, C.: Two-dimensional crystallization of a membrane protein on a detergent-resistant lipid monolayer. Journal of Molecular Biology (London) 308 (4), pp. 639 - 647 (2001)

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Padan , E.; Venturi, M.; Gerchman, Y.; Dover, N.: Na⁺/H⁺ antiporters. Biochimica et Biophysica Acta, Bioenergetics 1505 (1), pp. 144 - 157 (2001)

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Kuglstatter, A.; Ermler, U.; Michel, H.; Baciou, L.; Fritzsch, G.: X-ray Structure Analyses of Photosynthetic Reaction Center Variants from Rhodobacter sphaeroides: Structural Changes Induced by Point Mutations at Position L209 Modulate Electron and Proton Transfer. Biochemistry 40 (14), pp. 4253 - 4260 (2001)

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Rousselet, A.; Euteneuer, U.; Bordes, N.; Ruiz, T.; Hui Bon Hua , G.; Bornens, M.: Structural and functional effects of hydrostatic pressure on centrosomes from vertebrate cells. Cell Motility and the Cytoskeleton 48, pp. 262 - 276 (2001)

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Yoo, H.-Y.; Boatz, J. A.; Helms, V.; McCammon, J. A.; Langhoff, P. W.: Chromophore Protonation States and the Proton Shuttle Mechanism in Green Fluorescent Protein: Inferences Drawn from ab Initio Theoretical Studies of Chemical Structures and Vibrational Spectra. The Journal of Physical Chemistry B 105 (14), pp. 2850 - 2857 (2001)

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Bárcena, M.; Ruiz, T.; Donate, L. E.; Brown, S. E.; Dixon, N. E.; Radermacher, M.; Carazo, J. M.: The DnaB·DnaC complex: a structure based on dimers assembled around an occluded channel. The EMBO Journal 20 (6), pp. 1462 - 1468 (2001)

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Buet, P.; Lewitzki, E.; Grell, E.; Albrecht-Gary, A.-M.; Wannowius, K. J.; Mass, F.; Elias, H.; Mundt, A.A.; Dupont, Y.: Concentration Jump Experiments for the Precise Determination of Rate Constants of Reverse Reactions in the Millisecond Time Range. Analytical Chemistry 73 (5), pp. 857 - 863 (2001)

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Gerchman, Y.; Rimon, A.; Venturi, M.; Padan, E.: Oligomerization of NhaA, the Na⁺/H⁺ Antiporter of Escherichia coli in the Membrane and Its Functional and Structural Consequences. Biochemistry 40 (11), pp. 3403 - 3412 (2001)

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Lancaster, C. R. D.; Groß, R.; Simon, J.: A third crystal form of Wolinella succinogenes quinol:fumarate reductase reveals domain closure at the site of fumarate reduction. European Journal of Biochemistry 268 (6), pp. 1820 - 1827 (2001)

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Nagel, G.; Szellas, T.; Riordan, J. R.; Friedrich, T.; Hartung, K.: Non-specific activation of the epithelial sodium channel by the CFTR chloride channel. EMBO Reports 2 (3), pp. 249 - 254 (2001)

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Schmies, G.; Engelhard, M.; Wood, P. G.; Nagel, G.; Bamberg, E.: Electrophysiological characterization of specific interactions between bacterial sensory rhodopsins and their transducers. Proceedings of the National Academy of Sciences of the United States of America 98 (4), pp. 1555 - 1559 (2001)

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Journal Article

Lill, M. A.; Helms, V.: Compact parameter set for fast estimation of proton transfer rates. The Journal of Chemical Physics 114 (3), pp. 1125 - 1132 (2001)

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Journal Article

Behlau, M.; Mills, D. J.; Quader, H.; Kühlbrandt, W.; Vonck, J.: Projection structure of the monomeric porin OmpG at 6 å resolution. Journal of Molecular Biology (London) 305 (1), pp. 71 - 77 (2001)

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Bartoschek, S.; Buurman, G.; Thauer, R. K.; Geierstanger, B. H.; Weyrauch, J. P.; Griesinger, C.; Nilges, M.; Hutter, M. C.; Helms, V.: Re‐Face Stereospecificity of Methylenetetrahydromethanopterin and Methylenetetrahydrofolate Dehydrogenases is Predetermined by Intrinsic Properties of the Substrate. ChemBioChem: A European Journal of Chemical Biology 2, pp. 530 - 541 (2001)

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Grewer, C.; Mobarekeh, S. A. M.; Watzke, N.; Rauen, T.; Schaper, K.: Substrate Translocation Kinetics of Excitatory Amino Acid Carrier 1 Probed with Laser-Pulse Photolysis of a New Photolabile Precursor of d-Aspartic Acid. Biochemistry 40 (1), pp. 232 - 240 (2001)

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Grimaldi, S.; MacMillan, F.; Ostermann, T.; Ludwig, B.; Michel, H.; Prisner, T.: Q_H^*- Ubisemiquinone Radical in the bo₃-Type Ubiquinol Oxidase Studied by Pulsed Electron Paramagnetic Resonance and Hyperfine Sublevel Correlation Spectroscopy. Biochemistry 40 (4), pp. 1037 - 1043 (2001)

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Scharff, E. I.; Lücke, C.; Fritzsch, G.; Koepke, J.; Hartleib, J.; Dierl, S.; Rüterjans, H.: Crystallization and preliminary X-ray crystallographic analysis of DFPase from Loligo vulgaris. Acta Crystallographica Section D-Biological Crystallography 57 (1), pp. 148 - 149 (2001)

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Schiller, H.; Molsberger, E.; Janssen , P.; Michel, H.; Reiländer, H.: Solubilization and purification of the human ETB endothelin receptor produced by high-level fermentation in Pichia pastoris. Receptors and Channels 7 (6), pp. 453 - 469 (2001)

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Thesis - PhD (6)

2001

Thesis - PhD

Burzik, C.: Die Ladungstranslokation der F₁F₀-ATP-Synthase aus Illyobacter tartaricus. Dissertation, 92 pp., Fachbereich Biochemie, Pharmazie, Lebensmittelchemie, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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Thesis - PhD

Dietrich, J.: Biochemische und elektronenkristallographische Untersuchungen an Membranproteinen. Dissertation, 102 pp., Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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Thesis - PhD

Ivanovic, A.: Klonierung rekombinanter Histamin H₁-Rezeptoren und deren Charakterisierung, Solubilisierung und Reinigung nach heterologer Produktion. Dissertation, 149 pp., Fachbereich chemische und pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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Thesis - PhD

Müller, M. F. H.: Vektorieller Ionentransport durch heterolog produzierte Membranproteine thermophiler, methanogener Archaea. Dissertation, 214 pp., Fachbereich Chemie, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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Thesis - PhD

Reinhart, C.: Charakterisierung, Solubilisierung und Reinigung eines ß_2-adrenergen Rezeptors nach heterologer Produktion in der methylotrophen Hefe Pichia pastoris. Dissertation, 149 pp., Fachbereich Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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Thesis - PhD

Szmolenszky, A.: Development and Characterization of Antibodies and Antibody Fragments Against the Human β2-Adrenergic Receptor. Dissertation, 177 pp., Fachbereich Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2001)

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Thesis - Diploma (5)

2001

Thesis - Diploma

Meesters, C.: Identifizierung der Extramembrandomänen im Na⁺/H⁺-Antiporter NhaA von E. coli durch Markierung mit Goldpartikel und Antikörperfragmenten an 2D-Kristallen. Diploma, 73 pp., Institut für Allgemeine Botanik, Johannes Gutenberg-Universität, Mainz (2001)

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Thesis - Diploma

Hanekop, N.: Phospholipidbindung im Cytochrom bc₁-Komplex. Diploma, 73 pp., Fachbereich Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2001)

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Thesis - Diploma

Eschenröder, N.: Selection and production of membrane protein specific scFv fragments using phage display library. Diploma, 85 pp., Fachbereich Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2001)

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Thesis - Diploma

Hofacker, M. M.: Gezielter Austausch von Aminosäuren im Bereich des distalen Häms der Fumarat-Reduktase von Wolinella succinogenes. Diploma, 76 pp., Fachbereich Chemische und Pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2001)

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Thesis - Diploma

Sauer, U. S.: Gezielter Ausstausch von Aminosäuren im Bereich des proximalen Häms der Fumarate-Reduktase von Wolinella succinogenes. Diploma, 100 pp., Fachbereich chemische und pharmazeutische Wissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2001)

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