Publications 2018 - Theoretical Biophysics

A. H. Bahrami, T. R. Weikl, “Curvature-Mediated Assembly of Janus
Nanoparticles on Membrane Vesicles” Nano Lett., (2018).
[https://dx.doi.org/10.1021/acs.nanolett.7b04855]

P. Cossio, M. Allegretti, F. Mayer, V. Müller, J. Vonck, G. Hummer: Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase. Microscopy 1-8 (2018).
[https://dx.doi.org/10.1093/jmicro/dfy033]

P. Cossio, G. Hummer, A. Szabo, “Transition paths in single-molecule force spectroscopy” J. Chem. Phys. 148, 123309 (2018).
[https://dx.doi.org/10.1063/1.5004767]

R. Covino, G. Hummer, R. Ernst: Integrated Functions of Membrane Property Sensors and a Hidden Side of  the Unfolded Protein Response. Molecular Cell. 2018 Aug 2;71(3):458-467.
https://dx.doi.org/10.1016/j.molcel.2018.07.019

Markus Gränz, Nicole Erlenbach, Philpp Spindler, Dnyaneshwar B. Gophane, Lukas S. Stelzl, Snorri T. Sigurdsson, Thomas F. Prisner, Angew. Chem. Int. Ed. 57, 33, 10540-10543 (2018)
[https://dx.doi.org/10.1002/anie.201803682]

M. Linke, J. Köfinger, G. Hummer, "Rotational Diffusion Depends on Box Size in Molecular Dynamics Simulations" J. Phys. Chem. Lett. 9, 11, 2874-2878 (2018).
https://dx.doi.org/10.1021/acs.jpclett.8b01090

M. Linke, J. Köfinger, G. Hummer, "Fully Anisotropic Rotational Diffusion Tensor from Molecular Dynamics  Simulations"  J. Phys. Chem. B 122, 21, 5630-5639 (2018).
https://dx.doi.org/10.1021/acs.jpcb.7b11988

S. Mamatkulov and N. Schwierz. Force fields for monovalent and divalent metal cations in TIP3P water  based on thermodynamic and kinetic properties. J. Chem. Phys., 148(7), 074504, (2018). [https://dx.doi.org/doi/10.1021/acs.jpcb.6b10189]

A. S. Ramírez, J. Boilevin, A. R. Mehdipour, G. Hummer, T. Darbre, J.-L. Reymond, K. P. Locher, “Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase” Nature Commun., 9:445. (2018).
[https://dx.doi.org/10.1038/s41467-018-02880-2]

E. Rossini, A.D. Bochevarov, E.W. Knapp “Empirical Conversion of pKa Values between Different Solvents and Interpretation of the Parameters:  Application to Water, Acetonitrile, Dimethyl Sulfoxide, and Methanol.”  ACSOmega 3, 1653−1662 (2018).
[https://dx.doi.org/10.1021/acsomega.7b01895]

M. Vögele, J. Köfinger, G. Hummer, "Hydrodynamics of Diffusion in Lipid Membrane Simulations"  Phys. Rev. Lett. 120, 26, 268104 (2018).
https://doi.org/10.1103/PhysRevLett.120.268104


Master's Thesis

Patrick Quoika: Thermodynamic and structural properties of dense  protein solutions. Goethe-Universität, Frankfurt am Main, 2018.

Bachelor's Thesis
Sebastian Roy: Integrating experimental data into replica simulations of biomolecules. Goethe-Universität, Frankfurt am Main, 2018

Contact:

Max Planck Institute of Biophysics

Prof. Dr. Gerhard Hummer, Managing Director
Department of Theoretical Biophysics
Assistant to the Director: Christina Brandt

Phone: +49 (0) 69 6303-2501
E-mail: office-hummer(at)biophys.mpg.de

Dept. Publications by year: