Publikationen des Max-Planck-Institutes für Biophysik
Zeitschriftenartikel (3097)
2024
Zeitschriftenartikel
33 (6), e5018 (2024)
Mutational and structural studies of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism. Protein Science
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15, 3992 (2024)
High-confidence 3D template matching for cryo-electron tomography. Nature Communications
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Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism. Structure, S. 1 - 10.e1-e4 (2024)
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10 (17), eadk6285 (2024)
Thinner is not always better: Optimizing cryo-lamellae for subtomogram averaging. Science Advances
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31, S. 683 - 698.e7 (2024)
A dual-targeting succinate dehydrogenase and F1Fo-ATP synthase inhibitor rapidly sterilizes replicating and non-replicating Mycobacterium tuberculosis. Cell Chemical Biology
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Selective autophagy of macromolecular complexes: what does it take to be taken? Journal of Molecular Biology, 168574 (2024)
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The synergy between the PscC subunits for electron transfer to the P840 special pair in Chlorobaculum tepidum. Photosynthesis Research (2024)
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15, 3269 (2024)
Mechanism and structural dynamics of sulfur transfer during de novo [2Fe-2S] cluster assembly on ISCU2. Nature Communications
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121 (14), e2315568121 (2024)
Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis. PNAS
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11 (1), S. 60 - 71 (2024)
Extracting thermodynamic properties from van ’t Hoff plots with emphasis on temperature-sensing ion channels. Temperature
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63, e202402498 (2024)
Structure and internal dynamics of short RNA duplexes determined by a combination of pulsed EPR methods and MD simulations. Angewandte Chemie, International Edition in English
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160, 114111 (2024)
Encoding prior knowledge in ensemble refinement. The Journal of Chemical Physics
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Structure and assembly of a bacterial gasdermin pore. Nature (2024)
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IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. Journal of Molecular Biology, 168546 (2024)
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121 (11), e2314199121 (2024)
Mechanism of proton-powered c-ring rotation in a mitochondrial ATP synthase. PNAS
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Role of Protonation States in the Stability of Molecular Dynamics Simulations of High-Resolution Membrane Protein Structures. The Journal of Physical Chemistry B (2024)
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Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature Cell Biology (2024)
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Using cryo-EM to understand the assembly pathway of respiratory complex I. Acta Crystallographica Section D: Structural Biology (2024)
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55, S. 207 - 218 (2024)
Time-Resolved EPR Spectroscopy of Channelrhodopsin-2 Helix B Movements. Applied Magnetic Resonance
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187 (5), S. 1296 - 1311.e26 (2024)
Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries. Cell
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53 (7), S. 3327 - 3349 (2024)
Intracellular microbial rhodopsin-based optogenetics to control metabolism and cell signaling. Chemical Society Reviews
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121 (9), e2318046121 (2024)
Mechanism and cellular function of direct membrane binding by the ESCRT and ERES-associated Ca2+-sensor ALG-2. Proceedings of the National Academy of Sciences of the United States of America
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7 (2), S. 528 - 534 (2024)
Nanoporous Membranes of Densely Packed Carbon Nanotubes Formed by Lipid-Mediated Self-Assembly. ACS applied bio materials
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15, 1445 (2024)
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2. Nature Communications
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Hierarchical Assembly of Single-Stranded RNA. Journal of Chemical Theory and Computation (2024)
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10 (6), eadj8027 (2024)
Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore. Science Advances
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223 (2), e202304030 (2024)
hGRAD: A versatile "one-fits-all" system to acutely deplete RNA binding proteins from condensates. Journal of Cell Biology
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The palisade layer of the poxvirus core is composed of flexible A10 trimers. Nature Structural & Molecular Biology (2024)
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11, S. 634 - 641 (2024)
Exploring Rotational Diffusion with Plasmonic Coupling. ACS Photonics
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187 (3), S. 545 - 562 (2024)
Understanding the cell: Future views of structural biology. Cell
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84 (3), S. 404 - 408 (2024)
AlphaFold: Research accelerator and hypothesis generator. Molecular Cell
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19 (2), S. 226 - 236 (2024)
A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower. Nature Nanotechnology
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13, e84617 (2024)
Structure of the two-component S-layer of the archaeon Sulfolobus acidocaldarius. eLife
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Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils. Molecular Cell (2024)
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12, RP90174 (2024)
Tracing the substrate translocation mechanism in P-glycoprotein. eLife
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Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. ACS Chemical Biology (2024)
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15 (1), 205 (2024)
VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticity. Nature Communications
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15 (1), 65 (2024)
Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins. Nature Communications
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Vibrational Study of the Inward Proton Pump Xenorhodopsin NsXeR: Switch Order Determines Vectoriality. Journal of Molecular Biology, 168447 (2024)
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29 (1), S. 64 - 71 (2024)
Promotion of oxidative phosphorylation by complex I-anchored carbonic anhydrases? Trends in Plant Science
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31 (1), S. 150 - 158 (2024)
Structural insights into the iron nitrogenase complex. Nature Structural & Molecular Biology
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52 (1), gkad1065, S. 87 - 100 (2024)
RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy. Nucleic Acids Research 2023
Zeitschriftenartikel
12, RP88836 (2023)
Unveiling the domain-specific and RAS isoform-specific details of BRAF kinase regulation. eLife
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19 (24), S. 9060 - 9076 (2023)
Molecular Free Energies, Rates, and Mechanisms from Data-Efficient Path Sampling Simulations. Journal of Chemical Theory and Computation
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12 (12), S. 3521 - 3530 (2023)
Machine Learning-Supported Enzyme Engineering toward Improved CO2-Fixation of Glycolyl-CoA Carboxylase. ACS Synthetic Biology
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83, S. 4318 - 4333 (2023)
Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Molecular Cell
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19 (23), S. 8919 - 8929 (2023)
Neighbor List Artifacts in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation
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85, 102258 (2023)
Protein condensates as flexible platforms for membrane traffic. Current Opinion in Cell Biology
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186 (24), S. 5411 - 5427.e23 (2023)
The proteomic landscape of synaptic diversity across brain regions and cell types. Cell
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14 (1), 7197 (2023)
Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. Nature Communications
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39 (44), S. 15553 - 15562 (2023)
Adsorbing DNA to Mica by Cations: Influence of Valency and Ion Type. Langmuir
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597, S. 2728 - 2738 (2023)
Autophagy as a caretaker of nuclear integrity. FEBS Letters
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79 (11), S. 1010 - 1017 (2023)
Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography. Acta Crystallographica Section D: Structural Biology
Zeitschriftenartikel
30 (11), S. 1686 - 1694 (2023)
Conformational coupling of redox-driven Na+-translocation in Vibrio cholerae NADH:quinone oxidoreductase. Nature Structural & Molecular Biology
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30 (11), S. 1774 - 1785 (2023)
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments. Nature Structural & Molecular Biology
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19 (20), S. 7387 - 7404 (2023)
Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of Chemical Theory and Computation
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13, 1519 (2023)
Ethoxylate Polymer-Based 96-Well Screen for Protein Crystallization. Crystals
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14, 6543 (2023)
Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR. Nature Communications
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145 (40), S. 21832 - 21840 (2023)
Assessing the Role of R120 in the Gating of Cr ChR2 by Time-Resolved Spectroscopy from Femtoseconds to Seconds. Journal of the American Chemical Society
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84, 102368 (2023)
Ubiquitination and cell-autonomous immunity. Current Opinion in Immunology
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14, 5979 (2023)
Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II. Nature Communications
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12 (10), 1276 (2023)
Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes. Biology
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14, 1261180 (2023)
Preparing Arabidopsis thaliana root protoplasts for cryo electron tomography. Frontiers in Plant Science
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52 (18), S. 6497 - 6553 (2023)
Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation. Chemical Society Reviews
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108 (3), 035307 (2023)
Efficient generation of random rotation matrices in four dimensions. Physical Review E
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91 (9), S. 1329 - 1340 (2023)
Crystal structure of FAD-independent methylene-tetrahydrofolate reductase from Mycobacterium hassiacum. Proteins: Structure, Function, and Bioinformatics
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51 (15), gkad577, S. 7882 - 7899 (2023)
Histone divergence in trypanosomes results in unique alterations to nucleosome structure. Nucleic Acids Research
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33 (16), S. 3423 - 3435.e5 (2023)
Structure-function analysis suggests that the photoreceptor LITE-1 is a light-activated ion channel. Current biology: CB
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3 (3), 100123 (2023)
Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag. Biophysical Reports
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95, S. 11892 - 11900 (2023)
Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics. Analytical Chemistry
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120 (34), e2301447120 (2023)
Two conformations of the Tom20 preprotein receptor in the TOM holo complex. Proceedings of the National Academy of Sciences of the United States of America
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29 (Supplement\_1), S. 1937 - 1938 (2023)
Towards Temporal Resolution in Correlative Cryo-electron Tomography. Microscopy and Microanalysis
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30, S. 1119 - 1131 (2023)
Structure of nascent 5S RNPs at the crossroad between ribosome assembly and MDM2-p53 pathways. Nature Structural and Molecular Biology
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22 (8), S. 1809 - 1823 (2023)
Functional characterization of xanthorhodopsin in Salinivibrio socompensis, a novel halophile isolated from modern stromatolites. Photochemical & Photobiological Sciences
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19 (8), S. 992 - 1003 (2023)
Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nature Chemical Biology
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20 (12), S. 1939 - 1948 (2023)
DBlink: dynamic localization microscopy in super spatiotemporal resolution via deep learning. Nature Methods
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13, 11523 (2023)
Determining the structure of the bacterial voltage-gated sodium channel NaChBac embedded in liposomes by cryo electron tomography and subtomogram averaging. Scientific Reports
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14, 4165 (2023)
Crosstalk between regulatory elements in disordered TRPV4 N-terminus modulates lipid-dependent channel activity. Nature Communications
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15 (27), S. 11647 - 11656 (2023)
Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity. Nanoscale
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23, 19 (2023)
Identification and characterization of sugar-regulated promoters in Chaetomium thermophilum. BMC Biotechnology
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381 (6653), S. 70 - 75 (2023)
Translation dynamics in human cells visualized at high resolution reveal cancer drug action. Science
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30 (7), S. 970 - 979 (2023)
Mechanisms of inward transmembrane proton translocation. Nature Structural and Molecular Biology
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19 (7), S. 2146 - 2147 (2023)
FACS-mediated isolation of native autophagic vesicles. Autophagy
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A79 (Part 4), S. 331 - 338 (2023)
Crystal search - feasibility study of a real-time deep learning process for crystallization well images. Acta Crystallographica Section A: Foundations and Advances
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17 (13), S. 12684 - 12692 (2023)
Burst-by-Burst Measurement of Rotational Diffusion at Nanosecond Resolution Reveals Hot-Brownian Motion and Single-Chain Binding. ACS Nano
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14, 3683 (2023)
Cyclic di-AMP traps proton-coupled K+ transporters of the KUP family in an inward-occluded conformation. Nature Communications
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11 (16), 1592 (2023)
Production of Polyhydroxybutyrate by Genetically Modified Pseudomonas sp. phDV1: A Comparative Study of Utilizing Wine Industry Waste as a Carbon Source. Microorganisms
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19, S. 3406 - 3417 (2023)
Unwrapping NPT Simulations to Calculate Diffusion Coefficients. Journal of Chemical Theory and Computation
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14, 3418 (2023)
Co-translational binding of importins to nascent proteins. Nature Communications
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618 (7964), S. 402 - 410 (2023)
Heteromeric clusters of ubiquitinated ER-shaping proteins drive ER-phagy. Nature
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618 (7964), S. 394 - 401 (2023)
Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum. Nature
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92, S. 15 - 41 (2023)
Looping the Genome with SMC Complexes. Annual Review of Biochemistry
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9, eadg6689 (2023)
A bacterial tungsten-containing aldehyde oxidoreductase forms an enzymatic decorated protein nanowire. Science Advances
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19 (9), S. 2601 - 2606 (2023)
“Autophagic landscapes: on the paradox of survival through self-degradation” – A science-inspired exhibition. Autophagy
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23 (10), S. 4111 - 4119 (2023)
Anisotropic Friction in a Ligand-Protein Complex. Nano Letters
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13, 8270 (2023)
Selecting optimal support grids for super-resolution cryogenic correlated light and electron microscopy. Scientific Reports
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30 (5), S. 499 - 512 (2023)
Selective killing of the human gastric pathogen Helicobacter pylori by mitochondrial respiratory complex I inhibitors. Cell Chemical Biology
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6 (2023)
How Membrane Contact Sites Shape the Phagophore. Contact
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17 (1), S. 121 - 127 (2023)
1H, 13C, 15N backbone chemical shift assignments of the extended ARID domain in human AT-rich interactive domain protein 5a (Arid5a). Biomolecular NMR Assignments