Publications of Gerhard Hummer
All genres
Journal Article (317)
301.
Journal Article
36 (3), pp. 285 - 291 (1996)
Electrostatic potential of a homogeneously charged square and cube in two and three dimensions. Journal of Electrostatics 302.
Journal Article
103, pp. 175 - 189 (1996)
A statistical mechanical description of biomolecular hydration. Faraday Discussions 303.
Journal Article
100 (4), pp. 1206 - 1215 (1996)
Free Energy of Ionic Hydration. The Journal of Physical Chemistry 304.
Journal Article
68 (5), pp. 1639 - 1652 (1995)
Hydration of nucleic acid fragments: comparison of theory and experiment for high-resolution crystal structures of RNA, DNA, and DNA-drug complexes. Biophysical Journal 305.
Journal Article
235 (3), pp. 297 - 302 (1995)
The numerical accuracy of truncated Ewald sums for periodic systems with long-range Coulomb interactions. Chemical Physics Letters 306.
Journal Article
99 (38), pp. 14188 - 14194 (1995)
Hydration free energy of water. The Journal of Physical Chemistry 307.
Journal Article
50 (6), pp. 5085 - 5095 (1994)
Statistical mechanical treatment of the structural hydration of biological macromolecules: Results for B-DNA. Physical Review E 308.
Journal Article
51 (2), pp. 147 - 165 (1994)
Ion pair potentials-of-mean-force in water. Biophysical Chemistry 309.
Journal Article
6 (23A), pp. A141 - A144 (1994)
Computer simulation of aqueous Na-Cl electrolytes. Journal of Physics: Condensed Matter 310.
Journal Article
11 (6), pp. 1327 - 1344 (1994)
An Extension of the Rigorous Base-unit Oriented Description of Nucleic Acid Structures. Journal of Biomolecular Structure and Dynamics 311.
Journal Article
81 (5), pp. 1155 - 1163 (1994)
Computer simulations do not support Cl-Cl pairing in aqueous NaCl solution. Molecular Physics 312.
Journal Article
49 (1), pp. 591 - 596 (1994)
Computation of the water density distribution at the ice-water interface using the potentials-of-mean-force expansion. Physical Review E 313.
Journal Article
1 (2), pp. 107 - 118 (1993)
The localization of chromosome domains in human interphase nuclei. Semi-automated two-dimensional image acquisition and analysis of fluorescence in situ hybridization signals. Bioimaging 314.
Journal Article
1 (2), pp. 96 - 106 (1993)
The localization of chromosome domains in human interphase nuclei. Three-dimensional distance determinations of fluorescence in situ hybridization signals from confocal laser scanning microscopy. Bioimaging 315.
Journal Article
98 (1), pp. 581 - 591 (1993)
Correlations and free energies in restricted primitive model descriptions of electrolytes. The Journal of Chemical Physics 316.
Journal Article
77 (4), pp. 769 - 785 (1992)
Pair correlations in an NaCl-SPC water model: Simulations versus extended RISM computations. Molecular Physics 317.
Journal Article
75 (3), pp. 633 - 651 (1992)
An extended RISM study of simple electrolytes: pair correlations in a NaCl-SPC water model. Molecular Phylogenetics and Evolution Book Chapter (11)
318.
Book Chapter
2022, pp. 341 - 352. Springer (2019)
Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods. In: Methods in Molecular Biology, Vol. 319.
Book Chapter
Non-equilibrium molecular dynamics for biomolecular systems using fluctuation theorems. In: Hierarchical Methods for Dynamics in Complex Molecular Systems: IAS Winter School, 5 – 9 March 2012 Forschungszentrum Jülich GmbH Lecture Notes, pp. 269 - 279 (Ed. Grotendorst, J.). Forschungszentrum Jülich, Jülich (2012)
320.
Book Chapter
Thermodynamics and kinetics of single-molecule force spectroscopy. In: Theory and Evaluation of Single-molecule Signals, pp. 139 - 178 (Eds. Barkai, E.; Brown, F.; Orrit, M.; Yang, H.). World Scientific, New Jersey (2008)
321.
Book Chapter
59, pp. 713 - 740. Annual Reviews., Palo Alto, Calif. [etc.] (2008)
Water in nonpolar confinement: from nanotubes to proteins and beyond. In: Annual Review of Physical Chemistry, Vol. 322.
Book Chapter
Nonequilibrium Methods for Equilibrium Free Energy Calculations. In: Free Energy Calculations: Theory and Applications in Chemistry and Biology, pp. 171 - 198 (Eds. Chipot, C.; Pohorille, A.). Springer, Berlin, Heidelberg (2007)
323.
Book Chapter
Equation-Free Modeling For Complex Systems. In: Handbook of Materials Modeling: Methods, pp. 1453 - 1475 (Ed. Yip, S.). Springer Netherlands, Dordrecht (2005)
324.
Book Chapter
Theoretical and Computational Methods of Biomolecular Hydration. In: Water in Biomaterials Surface Science, pp. 25 - 52 (Ed. Morra, M.) (2001)
325.
Book Chapter
Theories of Hydrophobic Effects and the Description of Free Volume in Complex Liquids. In: New Approaches to Problems in Liquid State Theory: Inhomogeneities and Phase Separation in Simple, Complex and Quantum Fluids, pp. 407 - 420 (Eds. Caccamo, C.; Hansen, J.-P.; Stell, G.). Springer Netherlands, Dordrecht (1999)
326.
Book Chapter
2, pp. 193 - 217 (Eds. Papa, S.; Guerrieri, F.; Tager, J. M.). Springer, New York (1999)
Oxygen Reduction and Proton Translocation by the Heme-Copper Oxidases. In: Frontiers of Cellular Bioenergetics: Molecular Biology, Biochemistry, and Physiopathology, Vol. 327.
Book Chapter
64, pp. 299 - 308 (Eds. Schoenborn, B. P.; Knott, R. B.). Springer, Boston, MA (1996)
Theoretical Description of Biomolecular Hydration. In: Neutrons in Biology, Vol. 328.
Book Chapter
Potential-of-mean-force description of ionic interactions and structural hydration in biomolecular systems. In: Nonlinear Excitations in Biomolecules, pp. 83 - 99 (Ed. Peyrard, M.). Springer, Berlin (1995)
Proceedings (2)
329.
Proceedings
Simulation and theory of electrostatic interactions in solution: computational chemistry, biophysics, and aqueous solutions. AIP Conference Proceedings; 492, Sante Fe, New Mexico (USA, June 23, 1999 - June 25, 1999. American Institute of Physics, Melville (1999), 534 pp.
330.
Proceedings
Biological physics: third international symposium. AIP Conference Proceedings; 487, Sante Fe, New Mexico (USA, 1999-09. American Institute of Physics, Melville (1999), 290 pp.
Conference Paper (5)
331.
Conference Paper
11246, UNSP 112460N (Eds. Gregor, I.; Koberling, F.; Erdmann, R.). SPIE BIOS, San Francisco, Carlifornia, United States, February 01, 2020 - February 02, 2020. Spie-Int Soc Optical Engineering, Bellingham (2020)
Quantitative single-molecule localization microscopy reports on protein numbers in signaling protein complexes. In: Proceedings of SPIE: Single molecule spectroscopy and superresolution imaging XIII, Vol. 332.
Conference Paper
10071, 100710K. SPIE BiOS, 2017, San Francisco, California, United States, January 28, 2017 - February 02, 2017. (2017)
Molecular counting of membrane receptor subunits with single-molecule localization microscopy. In: Proceedings SPIE 10071, Single Molecule Spectroscopy and Superresolution Imaging X, Vol. 333.
Conference Paper
5592, pp. 214 - 219. International Society for Optics and Photonics (2005)
Simulations of nanoscale flow: water, proton, and biopolymer transport through carbon nanotube membranes. In: Nanofabrication: Technologies, Devices, and Applications, Vol. 334.
Conference Paper
Hydrophobic & hydrophilic: Theoretical models of solvation for molecular biophysics. In: 2. International Congress on Theoretical Chemical Physics, New Orleans, LA (United States), 9-13 Mar 1996. (1996)
335.
Conference Paper
Hydrophobic ampersand hydrophilic: Theoretical models of solvation for molecular biophysics. In: Second international congress on theoretical chemical physics - ICTCP II; New Orleans, LA (United States); 9-13 Mar 1996. (1996)
Report (5)
336.
Report
Computer simulation of protein solvation, hydrophobic mapping, and the oxygen effect in radiation biology. Los Alamos National Laboratory, Los Alamos (1997), 22 pp.
337.
Report
Theoretical studies of the interaction of water with DNA oligomers and proteins. Los Alamos National Laboratory, Los Alamos (1996)
338.
Report
Predicting B-DNA structure from sequence. Los Alamos National Lab. (LANL), Los Alamos, NM (United States) (1995), 9 pp.
339.
Report
Diffusion of a protein in configuration space. Los Alamos National Laboratory, Los Alalmos (1995), 29 pp.
340.
Report
A new approach to calculate the hydration of DNA molecules. Los Alamos National Laboratory, Los Alamos (1993), 20 pp.