Publications of José D. Faraldo-Gómez

Journal Article (25)

1.
Journal Article
Leone, V.; Pogoryelov, D.; Meier, T.; Faraldo-Gómez, J. D.: On the principle of ion selectivity in Na+/H+-coupled membrane proteins: Experimental and theoretical studies of an ATP synthase rotor. Proceedings of the National Academy of Sciences of the United States of America 112 (10), pp. E1057 - E1066 (2015)
2.
Journal Article
Branduardi, D.; Faraldo-Gómez, J. D.: String Method for Calculation of Minimum Free-Energy Paths in Cartesian Space in Freely Tumbling Systems. Journal of Chemical Theory and Computation 9 (9), pp. 4140 - 4154 (2013)
3.
Journal Article
Corbi-Verge, C.; Marinelli, F.; Zafra-Ruano, A.; Ruiz-Sanz, J.; Luque, I.; Faraldo-Gómez, J. D.: Two-state dynamics of the SH3–SH2 tandem of AbI kinase and the allosteric role of the N-cap. Proceedings of the National Academy of Sciences of the United States of America 110 (36), pp. E3372 - E3380 (2013)
4.
Journal Article
Garzón, D.; Anselmi, C.; Bond, P. J.; Faraldo-Gómez, J. D.: Dynamics of the antigen-binding grooves in CD1 proteins: reversible hydrophobic collapse in the lipid-free state. The Journal of Biological Chemistry 288 (27), pp. 19528 - 19536 (2013)
5.
Journal Article
Schulz, S.; Iglesias-Cans, M.; Krah, A.; Yildiz, Ö.; Leone, V.; Matthies, D.; Cook, G. M.; Faraldo-Gómez, J. D.; Meier, T.: A New Type of Na+-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. PLoS Biology 11 (6), e1001596, pp. 1 - 12 (2013)
6.
Journal Article
Mayer, F.; Leone, V.; Langer, J. D.; Faraldo-Gómez, J. D.; Müller, V.: A c Subunit with Four Transmembrane Helices and One Ion (Na+)-binding Site in an Archaeal ATP Synthase. The Journal of Biological Chemistry 287 (47), pp. 39327 - 39337 (2012)
7.
Journal Article
Pogoryelov, D.; Klyszejko, A.; Krasnoselska, G. O.; Heller, E.-M.; Leone, V.; Langer, J. D.; Vonck, J.; Müller, D. J.; Faraldo-Gómez, J. D.; Meier, T.: Engineering rotor ring stoichiometries in the ATP synthase. Proceedings of the National Academy of Sciences of the United States of America 109 (25), pp. E1599 - E1608 (2012)
8.
Journal Article
Schlegel, K.; Leone, V.; Faraldo-Gómez, J. D.; Müller, V.: Promiscuous archaeal ATP synthase concurrently coupled to Na+ and H+ translocation. Exploring copper compounds, pp. 947 - 952 (2012)
9.
Journal Article
Davies, K. M.; Anselmi, C.; Wittig, I.; Faraldo-Gómez, J. D.; Kühlbrandt, W.: Structure of the yeast F1F0-ATP synthase dimer and its role in shaping the mitochondrial cristae. Proceedings of the National Academy of Sciences of the USA 109 (34), pp. 13602 - 13607 (2012)
10.
Journal Article
Sanderson, J. P.; Waldburger-Hauri, K.; Garzón, D.; Matulis, G.; Mansour, S.; Pumphrey, N. J.; Lissin, N.; Villiger, P. M.; Jakobsen, B.; Faraldo-Gómez, J. D. et al.; Gadola, S. D.: Natural variations at position 93 of the invariant Vα24-Jα18 α chain of human iNKT-cell TCRs strongly impact on CD1d binding. European Journal of Immunology 42 (1), pp. 248 - 255 (2012)
11.
Journal Article
Symersky, J.; Pagadala, V.; Osowski, D.; Krah, A.; Meier, T.; Faraldo-Gómez, J. D.; Mueller, D. M.: Structure of the c10 ring of the yeast mitochondrial ATP synthase in the open conformation. Nature Structural and Molecular Biology 19, pp. 485 - 491 (2012)
12.
Journal Article
Marinelli, F.; Kuhlmann, S.; Grell, E.; Kunte, H.-J.; Ziegler, C.; Faraldo-Gómez, J. D.: Evidence for an allosteric mechanism of substrate release from membrane-transporter accessory binding proteins. Proceedings of the National Academy of Sciences of the United States of America 108 (49), pp. E1285 - E1292 (2011)
13.
Journal Article
Bond, P. J.; Faraldo-Gómez, J. D.: Molecular Mechanism of Selective Recruitment of Syk Kinases by the Membrane Antigen-Receptor Complex. The Journal of Biological Chemistry 286 (29), pp. 25872 - 25881 (2011)
14.
Journal Article
Staritzbichler, R.; Anselmi, C.; Forrest, L. R.; Faraldo-Gómez, J. D.: GRIFFIN: A Versatile Methodology for Optimization of Protein-Lipid Interfaces for Membrane Protein Simulations. Journal of Chemical Theory and Computation 7 (4), pp. 1167 - 1176 (2011)
15.
Journal Article
Faraldo-Gómez, J. D.; Forrest, L. R.: Modeling and simulation of ion-coupled and ATP-driven membrane proteins. Current Opinion in Structural Biology 21 (2), pp. 173 - 179 (2011)
16.
Journal Article
Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)
17.
Journal Article
Scharf, L.; Li, N.-S.; Hawk, A. J.; Garzón, D.; Zhang, T.; Fox, L. M.; Kazen, A. R.; Shah, S.; Haddadian, E. J.; Gumperz, J. E. et al.; Saghatelian, A.; Faraldo-Gómez, J. D.: The 2.5 Å Structure of CD1c in Complex with a Mycobacterial Lipid Reveals an Open Groove Ideally Suited for Diverse Antigen Presentation. Immunity 33, pp. 853 - 862 (2010)
18.
Journal Article
Leone, V.; Krah, A.; Faraldo-Gómez, J. D.: On the Question of Hydronium Binding to ATP-Synthase Membrane Rotors. Biophysical Journal 99 (7), pp. L53 - L55 (2010)
19.
Journal Article
Anselmi, C.; Grininger, M.; Gipson, P.; Faraldo-Gómez, J. D.: Mechanism of Substrate Shuttling by the Acyl-Carrier Protein within the Fatty Acid Mega-Synthase. Journal of the American Chemical Society 132 (35), pp. 12357 - 12364 (2010)
20.
Journal Article
Krah, A.; Pogoryelov, D.; Langer, J. D.; Bond, P. J.; Meier, T.; Faraldo-Gómez, J. D.: Structural and energetic basis for H+ versus Na+ binding selectivity in ATP synthase Fo rotors. Biochimica et Biophysica Acta: BBA 1797, pp. 763 - 772 (2010)
21.
Journal Article
Krah, A.; Pogoryelov, D.; Meier, T.; Faraldo-Gómez, J. D.: On the Structure of the Proton-Binding Site in the Fo Rotor of Chloroplast ATP Synthases. Journal of Molecular Biology 395, pp. 20 - 27 (2010)
22.
Journal Article
Garzón, D.; Bond, P. J.; Faraldo-Gómez, J. D.: Predicted structural basis for CD1c presentation of mycobacterial branched polyketides and long lipopeptide antigens. Molecular Immunology 47 (1-2), pp. 253 - 260 (2009)
23.
Journal Article
Pogoryelov, D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure of the rotor ring of a proton-dependent ATP synthase. Nature Structural and Molecular Biology 16 (10), pp. 1068 - 1073 (2009)
24.
Journal Article
Meier, T.; Krah, A.; Bond, P. J.; Pogoryelov, D.; Diederichs, K.; Faraldo-Gómez, J. D.: Complete Ion-Coordination Structure in the Rotor Ring of Na+-Dependent F-ATP Synthases. Journal of Molecular Biology 391 (2), pp. 498 - 507 (2009)
25.
Journal Article
Lamoureux, G.; Faraldo-Gómez, J. D.; Krupin, S.; Noskov, S. Y.: Polarizable model of chloroform based on classical Drude oscillators. Chemical Physics Letters 468 (4-6), pp. 270 - 274 (2009)

Book Chapter (1)

26.
Book Chapter
Meier, T.; Faraldo-Gómez, J. D.; Börsch, M.: ATP-Synthase - A Paradigmatic Molecular Machine. In: Molecular Machines in Biology, Chapter 11, pp. 208 - 238 (Ed. Frank, J.). Cambridge University Press, New York (2011)
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