Eugene Kim Publications

Pradhan, B.; Deep, A.; König, J.; Baaske, M. D.; Corbett, K. D.; Kim, E.: Loop-extrusion-mediated plasmid DNA cleavage by the bacterial SMC Wadjet complex. Molecular Cell 85 (2025)

Cutts, E. E.; Tetiker, D.; Kim, E.; Aragon, L.: Molecular mechanism of condensin I activation by KIF4A. The EMBO Journal (2024)

Rutkauskas, M.; Kim, E.: In vitro dynamics of DNA loop extrusion by structural maintenance of chromosomes complexes. Current Opinion in Genetics & Development 90, 102284 (2024)

Jeppsson, K.; Pradhan, B.; Sutani, T.; Sakata, T.; Umeda Igarashi, M.; Berta, D. G.; Kanno, T.; Nakato, R.; Shirahige, K.; Kim, E. et al.; Björkegren, C.: Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils. Molecular Cell 84 (5), pp. 867 - 882.e5 (2024)

Kim, E.; Barth, R.; Dekker, C.: Looping the Genome with SMC Complexes. Annual Review of Biochemistry 92, pp. 15 - 41 (2023)

Barth, R.; Pradhan, B.; Kim, E.; Davidson, I. F.; van der Torre, J.; Peters, J.-M.; Dekker, C.: Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments. Scientific Reports 13, 8100 (2023)

Pradhan, B.; Kanno, T.; Umeda Igarashi, M.; Loke, M. S.; Baaske, M. D.; Wong, J. S. K.; Jeppsson, K.; Björkegren, C.; Kim, E.: The Smc5/6 complex is a DNA loop-extruding motor. Nature 616 (7958), pp. 843 - 848 (2023)

Kim, E.; Gonzelez, A. M.; Pradhan, B.; van der Torre, J.; Dekker, C.: Condensin-driven loop extrusion on supercoiled DNA. Nature Structural and Molecular Biology 29 (7), pp. 719 - 727 (2022)

Hulleman, C. N.; Thorsen, R. Ø.; Kim, E.; Dekker, C.; Stallinga, S.; Rieger, B.: Simultaneous orientation and 3D localization microscopy with a Vortex point spread function. Nature Communications 12 (1), 5934 (2021)

Ryu, J.-K.; Bouchoux, C.; Liu, H. W.; Kim, E.; Minamino, M.; de Groot, R.; Katan, A. J.; Bonato, A.; Marenduzzo, D.; Michieletto, D. et al.; Uhlmann, F.; Dekker, C.: Bridging-induced phase separation induced by cohesin SMC protein complexes. Science Advances 7 (7), eabe5905 (2021)

Kim, E.; Kerssemakers, J.; Shaltiel, I. A.; Haering, C. H.; Dekker, C.: DNA-loop extruding condensin complexes can traverse one another. Nature 579 (7799), pp. 438 - 442 (2020)

Elbatsh, A. M. O.; Kim, E.; Eeftens, J. M.; Raaijmakers, J. A.; van der Weide, R. H.; García-Nieto, A.; Bravo, S.; Ganji, M.; Uit de Bos, J.; Teunissen, H. et al.; Medema, R. H.; de Wit, E.; Haering, C. H.; Dekker, C.; Rowland, B. D.: Distinct Roles for Condensin's Two ATPase Sites in Chromosome Condensation. Molecular Cell 76 (5), pp. 724 - 737 (2019)

Kim, S. H.; Ganji, M.; Kim, E.; Kim, E.; van der Torre, J.; Abbondanzieri, E.; Dekker, C.: DNA sequence encodes the position of DNA supercoils. eLife 7, e36557 (2018)

Ganji, M.; Shaltiel, I. A.; Bisht, S.; Kim, E.; Kalichava, A.; Haering, C. H.; Dekker, C.: Real-time imaging of DNA loop extrusion by condensin. Science 360 (6384), pp. 102 - 105 (2018)

Kim, E.; Baaske, M. D.; Schuldes, I.; Wilsch, P. S.; Vollmer, F.: Label-free optical detection of single enzyme-reactant reactions and associated conformational changes. Science Advances 3 (3), e1603044 (2017)

Kim, E.; Baaske, M. D.; Vollmer, F.: Towards next-generation label-free biosensors: recent advances in whispering gallery mode sensors. Lab on a Chip 17 (7), pp. 1190 - 1205 (2017)

Kim, E.; Baaske, M. D.; Vollmer, F.: In Situ Observation of Single-Molecule Surface Reactions from Low to High Affinities. Advanced Materials 28 (45), pp. 9941 - 9948 (2016)

Kim, E.; Foreman, M. R.; Baaske, M. D.; Vollmer, F.: Thermal characterisation of (bio)polymers with a temperature-stabilised whispering gallery mode microsensor. Applied Physics Letters 106 (16), 161101 (2015)

Kim, E.; Steinbrück, A.; Buscaglia, M. T.; Buscaglia, V.; Pertsch, T.; Grange, R.: Second-harmonic generation of single BaTiO₃ nanoparticles down to 22 nm diameter. ACS Nano 7 (6), pp. 5343 - 5349 (2013)