Publikationen des Max-Planck-Institutes für Biophysik

Publikationen des Max-Planck-Institutes für Biophysik

Zeitschriftenartikel (48)

2013
Zeitschriftenartikel
Rekittke, I.; Olkhova, E.; Wiesner, J.; Demmer, U.; Warkentin, E.; Jomaa, H.; Ermler, U.: Structure of the (E)-4-hydroxy-3-methyl-but-2-enyl-diphosphate reductase from Plasmodium falciparum. FEBS Letters 587 (24), S. 3968 - 3972 (2013)
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Cossio, P.; Hummer, G.: Bayesian analysis of individual electron microscopy images: towards structures of dynamic and heterogeneous biomolecular assemblies. Journal of Structural Biology 184 (3), S. 427 - 437 (2013)
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Zeitschriftenartikel
Fielding, A. J.; Parey, K.; Ermler, U.; Scheller, S.; Jaun, B.; Bennati, M.: Advanced electron paramagnetic resonance on the catalytic iron–sulfur cluster bound to the CCG domain of heterodisulfide reductase and succinate: quinone reductase. Journal of Biological Inorganic Chemistry 18 (8), S. 905 - 915 (2013)
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Zeitschriftenartikel
Quemin, E. R. J.; Lucas, S.; Daum, B.; Quax, T. E. F.; Kühlbrandt, W.; Forterre, P.; Albers, S.-V.; Prangishvili, D.; Krupovic, M.: First insights into the entry process of hyperthermophilic archaeal viruses. Journal of Virology 87 (24), S. 13379 - 13385 (2013)
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Zeitschriftenartikel
Koshy, C.; Schweikhard, E. S.; Gärtner, R. M.; Perez, C.; Yildiz, Ö.; Ziegler, C.: Structural evidence for functional lipid interactions in the betaine transporter BetP. The EMBO Journal 32 (23), S. 3096 - 3105 (2013)
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Zeitschriftenartikel
Fujishiro, T.; Tamura, H.; Schick, M.; Kahnt, J.; Xie, X.; Ermler, U.; Shima, S.: Identification of the HcgB Enzyme in [Fe]-Hydrogenase-Cofactor Biosynthesis. Angewandte Chemie, International Edition in English 52 (48), S. 12555 - 12558 (2013)
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Zeitschriftenartikel
Gaiko, O.; Bazzone, A.; Fendler, K.; Kaback, H. R.: Electrophysiological Characterization of Uncoupled Mutants of LacY. Biochemistry 52 (46), S. 8261 - 8266 (2013)
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Zeitschriftenartikel
Halang, P.; Leptihn, S.; Meier, T.; Vorburger, T.; Steuber, J.: The function of the Na+-driven flagellum of Vibrio cholerae is determined by osmolality and pH. Journal of Bacteriology 195 (21), S. 4888 - 4899 (2013)
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Zeitschriftenartikel
Best, R. B.; Hummer, G.; Eaton, W. A.: Native contacts determine protein folding mechanisms in atomistic simulations. Proceedings of the National Academy of Sciences of the United States of America 110 (44), S. 17874 - 17879 (2013)
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Zeitschriftenartikel
Kalayil, S.; Schulze, S.; Kühlbrandt, W.: Arginine oscillation explains Na+ independence in the substrate/product antiporter CaiT. Proceedings of the National Academy of Sciences of the United States of America 110 (43), S. 17296 - 17301 (2013)
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Zeitschriftenartikel
Okazaki, K.-i.; Hummer, G.: Phosphate release coupled to rotary motion of F1-ATPase. Proceedings of the National Academy of Sciences of the United States of America 110 (41), S. 16468 - 16473 (2013)
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Zeitschriftenartikel
Davies, K. M.; Daum, B.: Role of cryo-ET in membrane bioenergetics research. Biochemical Society Transactions 41 (5), S. 1227 - 1234 (2013)
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Zeitschriftenartikel
Parey, K.; Demmer, U.; Warkentin, E.; Wynen, A.; Ermler, U.; Dahl, C.: Structural, Biochemical and Genetic Characterization of Dissimilatory ATP Sulfurylase from Allochromatium vinosum. PLoS One 8 (9), S. e74707 - e74707 (2013)
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Zeitschriftenartikel
Daum, B.; Walter, A.; Horst, A.; Osiewacz, H. D.; Kühlbrandt, W.: Age-dependent dissociation of ATP synthase dimers and loss of inner-membrane cristae in mitochondria. Proceedings of the National Academy of Sciences of the United States of America 110 (38), S. 15301 - 15306 (2013)
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Zeitschriftenartikel
Branduardi, D.; Faraldo-Gómez, J. D.: String Method for Calculation of Minimum Free-Energy Paths in Cartesian Space in Freely Tumbling Systems. Journal of Chemical Theory and Computation 9 (9), S. 4140 - 4154 (2013)
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Zeitschriftenartikel
Kozuch, J.; von der Hocht, I.; Hilbers, F.; Michel, H.; Weidinger, I. M.: Resonance Raman Characterization of the Ammonia-Generated Oxo Intermediate of Cytochrome c Oxidase from Paracoccus denitrificans. Biochemistry 52 (36), S. 6197 - 6202 (2013)
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Zeitschriftenartikel
Sattig, T.; Rickert, C.; Bamberg, E.; Steinhoff, H.-J.; Bamann, C.: Light-Induced Movement of the Transmembrane Helix B in Channelrhodopsin-2. Angewandte Chemie, International Edition in English 52 (37), S. 9705 - 9708 (2013)
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Zeitschriftenartikel
Tamura, H.; Salomone-Stagni, M.; Fujishiro, T.; Warkentin, E.; Meyer-Klaucke, W.; Ermler, U.; shima, S.: Crystal Structures of [Fe]-Hydrogenase in Complex with Inhibitory Isocyanides: Implications for the H2-Activation Site. Angewandte Chemie, International Edition in English 52 (37), S. 9656 - 9659 (2013)
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Zeitschriftenartikel
Corbi-Verge, C.; Marinelli, F.; Zafra-Ruano, A.; Ruiz-Sanz, J.; Luque, I.; Faraldo-Gómez, J. D.: Two-state dynamics of the SH3–SH2 tandem of AbI kinase and the allosteric role of the N-cap. Proceedings of the National Academy of Sciences of the United States of America 110 (36), S. E3372 - E3380 (2013)
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Zeitschriftenartikel
Geibel, S.; Lörinczi, E.; Bamberg, E.; Friedrich, T.: Voltage Dependence of Proton Pumping by Bacteriorhodopsin Mutants with Altered Lifetime of the M Intermediate. PLoS One 8 (9), S. e73338 - e73338 (2013)
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Zeitschriftenartikel
Derrer, C.; Wittek, A.; Bamberg, E.; Carpaneto, A.; Dreyer, I.; Geiger, D.: Conformational Changes Represent the Rate-Limiting Step in the Transport Cycle of Maize SUCROSE TRANSPORTER1. The Plant Cell 25 (8), S. 3010 - 3021 (2013)
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Zeitschriftenartikel
Mager, T.; Braner, M.; Kubsch, B.; Hatahet, L.; Alkoby, D.; Rimon, A.; Padan, E.; Fendler, K.: Differential Effects of Mutations on the Transport Properties of the Na+/H+ Antiporter NhaA from Escherichia coli. The Journal of Biological Chemistry 288 (34), S. 24666 - 24675 (2013)
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Zeitschriftenartikel
Bevans, C. G.; Krettler, C.; Reinhart, C.; Tran, H.; Koßmann, K.; Watzka, M.; Oldenburg, J.: Determination of the warfarin inhibition constant Ki for vitamin K 2,3-epoxide reductase complex subunit-1 (VKORC1) using an in vitro DTT-driven assay. Biochimica et Biophysica Acta-General Subjects 1830 (8), S. 4202 - 4210 (2013)
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Zeitschriftenartikel
Garzón, D.; Anselmi, C.; Bond, P. J.; Faraldo-Gómez, J. D.: Dynamics of the antigen-binding grooves in CD1 proteins: reversible hydrophobic collapse in the lipid-free state. The Journal of Biological Chemistry 288 (27), S. 19528 - 19536 (2013)
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Zeitschriftenartikel
Ruehrer, S.; Michel, H.: Exploiting Leishmania tarentolae cell-free extracts for the synthesis of human solute carriers. Molecular Membrane Biology 30 (4), S. 288 - 302 (2013)
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Zeitschriftenartikel
Zhang, C.; Marcia, M.; Langer, J. D.; Peng, G.; Michel, H.: Role of the N-terminal signal peptide in the membrane insertion of Aquifex aeolicus F1F0 ATP synthase c-subunit. The FEBS Journal 280 (14), S. 3425 - 3435 (2013)
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Zeitschriftenartikel
Schulz, S.; Iglesias-Cans, M.; Krah, A.; Yildiz, Ö.; Leone, V.; Matthies, D.; Cook, G. M.; Faraldo-Gómez, J. D.; Meier, T.: A New Type of Na+-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. PLoS Biology 11 (6), e1001596, S. 1 - 12 (2013)
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Zeitschriftenartikel
Bazzone, A.; Costa, W. S.; Braner, M.; Călinescu, O.; Hatahet, L.; Fendler, K.: Introduction to Solid Supported Membrane Based Electrophysiology. Journal of Visualized Experiments 75, e50230 (2013)
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Zeitschriftenartikel
Neumann-Verhoefen, M.-K.; Neumann, K.; Bamann, C.; Radu, I.; Heberle, J.; Bamberg, E.; Wachtveitl, J.: Ultrafast Infrared Spectroscopy on Channelrhodopsin‑2 Reveals Efficient Energy Transfer from the Retinal Chromophore to the Protein. Journal of the American Chemical Society 135 (18), S. 6968 - 6976 (2013)
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Zeitschriftenartikel
Grewer, C.; Gameiro, A.; Mager, T.; Fendler, K.: Electrophysiological Characterization of Membrane Transport Proteins. Annual Review of Biophysics 42, S. 95 - 120 (2013)
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Zeitschriftenartikel
Perez, C.; Ziegler, C.: Mechanistic aspects of sodium-binding sites in LeuT-like fold symporters. Biological Chemistry 394 (5), S. 641 - 648 (2013)
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Zeitschriftenartikel
Janke, C.; Scholz, F.; Becker-Baldus, J.; Glaubitz, C.; Wood, P. G.; Bamberg, E.; Wachtveitl, J.; Bamann, C.: Photocycle and Vectorial Proton Transfer in a Rhodopsin from the Eukaryote Oxyrrhis marina. Biochemistry 52 (16), S. 2750 - 2763 (2013)
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Zeitschriftenartikel
Preiss, L.; Klyszejko, A. L.; Hicks, D. B.; Liu, J.; Fackelmayer, O. J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4. Proceedings of the National Academy of Sciences of the United States of America 110 (19), S. 7874 - 7879 (2013)
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Zeitschriftenartikel
Yaffe, D.; Radestock, S.; Shuster, Y.; Forrest, L. R.; Schuldiner, S.: Identification of molecular hinge points mediating alternating access in the vesicular monoamine transporter VMAT2. Proceedings of the National Academy of Sciences of the United States of America 110 (15), S. E1332 - E1341 (2013)
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Zeitschriftenartikel
Lórenz-Fonfría, V. A.; Resler, T.; Krause, N.; Nack, M.; Gossing, M.; Fischer von Mollard, G.; Bamann, C.; Bamberg, E.; Schlesinger, R.; Heberle, J.: Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating. Proceedings of the National Academy of Sciences of the United States of America 110 (14), S. E1273 - E1281 (2013)
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Zeitschriftenartikel
Korkmaz, F.; Ressl, S.; Ziegler, C.; Mäntele, W.: K+-induced conformational changes in the trimeric betaine transporter BetP monitored by ATR-FTIR spectroscopy. Biochimica et Biophysica Acta-Biomembranes 1828 (4), S. 1181 - 1191 (2013)
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Zeitschriftenartikel
Parey, K.; Fritz, G.; Ermler, U.; Kroneck, P. M. H.: Conserving energy with sulfate around 100 °C - structure and mechanism of key metal enzymes in hyperthermophilic Archaeoglobus fulgidus. Metallomics 5 (4), S. 302 - 317 (2013)
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Zeitschriftenartikel
Wilk, L.; Grunwald, M.; Liao, P.-N.; Walla, P. J.; Kühlbrandt, W.: Direct interaction of the major light-harvesting complex II and PsbS in nonphotochemical quenching. Proceedings of the National Academy of Sciences of the United States of America 110 (14), S. 5452 - 5456 (2013)
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Zeitschriftenartikel
Mills, D. J.; Vitt, S.; Strauss, M.; Shima, S.; Vonck, J.: De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy. eLife 2, e00218 (2013)
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Zeitschriftenartikel
Stamm, M.; Staritzbichler, R.; Khafizov, K.; Forrest, L. R.: Alignment of Helical Membrane Protein Sequences Using AlignMe. PLoS One 8 (3), e57731 (2013)
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Zeitschriftenartikel
Demmer, U.; Warkentin, E.; Srivastava, A.; Kockelkorn, D.; Pötter, M.; Marx, A.; Fuchs, G.; Ermler, U.: Structural Basis for a Bispecific NADP+ and CoA Binding Site in an Archaeal Malonyl-Coenzyme A Reductase. The Journal of Biological Chemistry 288 (9), S. 6363 - 6370 (2013)
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Zeitschriftenartikel
Hilbers, F.; von der Hocht, I.; Ludwig, B.; Michel, H.: True wild type and recombinant wild type cytochrome c oxidase from Paracoccus denitrificans show a 20-fold difference in their catalase activity. Biochimica et Biophysica Acta, Bioenergetics 1827 (3), S. 319 - 327 (2013)
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Zeitschriftenartikel
Kirchberg, K.; Michel, H.; Alexiev, U.: Exploring the entrance of proton pathways in cytochrome c oxidase from Paracoccus denitrificans: Surface charge, buffer capacity and redox-dependent polarity changes at the internal surface. Biochimica et Biophysica Acta, Bioenergetics 1827 (3), S. 276 - 284 (2013)
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Zeitschriftenartikel
Jaehme, M.; Michel, H.: Evaluation of cell-free protein synthesis for the crystallization of membrane proteins – a case study of the glutamate transporter family from Staphylothermus marinus. The FEBS Journal 280 (4), S. 1112 - 1125 (2013)
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Zeitschriftenartikel
Mörs, K.; Hellmich, U. A.; Basting, D.; Marchand, P.; Wurm, J. P.; Haase, W.; Glaubitz, C.: A lipid-dependent link between activity and oligomerization state of the M. tuberculosis SMR protein TBsmr. Biochimica et Biophysica Acta-Biomembranes 1828 (2), S. 561 - 567 (2013)
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Zeitschriftenartikel
Forrest, L. R.: (Pseudo-)Symmetrical Transport. Science 339 (6118), S. 339 - 401 (2013)
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Zeitschriftenartikel
Silverstein, N.; Crisman, T. J.; Forrest, L. R.; Kanner, B. I.: Cysteine Scanning Mutagenesis of Transmembrane Helix 3 of a Brain Glutamate Transporter Reveals Two Conformationally Sensitive Positions. The Journal of Biological Chemistry 288 (2), S. 964 - 973 (2013)
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Zeitschriftenartikel
Ciccarelli, L.; Connell, S. R.; Enderle, M.; Mills, D. J.; Vonck, J.; Grininger, M.: Structure and Conformational Variability of the Mycobacterium tuberculosis Fatty Acid Synthase Multienzyme Complex. Structure 21 (7), S. 1251 - 1257 (2013)
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Buchkapitel (5)

2013
Buchkapitel
Collinson, I.; Vonck, J.; Hizlan, D.: Using 2D Crystals to Analyze the Structure of Membrane Proteins. In: Methods in Molecular Biology, Bd. 1033, Chapter 4, S. 47 - 65 (Hg. Rapaport, D.; Herrmann, J. M.). Springer Science+Business Media, New York (2013)
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Buchkapitel
Krettler, C.; Reinhart, C.; Bevans, C. G.: Expression of GPCRs in Pichia pastoris for Structural Studies. In: Methods in Enzymology, Bd. 520, S. 1 - 29 (Hg. Conn, P. M.). Academic Press, Elsevier, Burlington (2013)
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Buchkapitel
Kühlbrandt, W.: Introduction to Electron Crystallography. In: Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols, Bd. 955, S. 1 - 16 (Hg. Schmidt-Krey, I.; Cheng, Y.). Springer, Heidelberg (2013)
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Buchkapitel
Meier, T.; Pogoryelov, D.: ATP Synthase Structure. In: Encyclopedia of Biophysics, S. 129 - 134 (Hg. Roberts, G.). Springer, Berlin, Heidelberg/Germany [et al.] (2013)
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Buchkapitel
Mills, D. J.; Vonck, J.: Choice and Maintenance of Equipment for Electron Crystallography. In: Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols, Bd. 995, S. 331 - 351 (Hg. Schmidt-Krey, I.; Cheng, Y.). Springer Science+Business Media New York 2013, Humana Totowa, NJ (2013)
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Hochschulschrift - Doktorarbeit (11)

2013
Hochschulschrift - Doktorarbeit
Garzón Osorio, D. P.: Computational studies of lipid antigen recognition, exchange, and presentation by the CD1 protein family. Dissertation, Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Jähme, M.: Evaluierung der zellfreien Produktion sekundär aktiver Transporter für die Proteinkristallisation. Dissertation, 156 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main (2013)
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Hochschulschrift - Doktorarbeit
Kaur, J.: Heterologous Production, Isolation and Characterisation of Selected Secondary Active Transporters from the APC, AEC, CaCA, CDF, DASS and ESS families. Dissertation, 209 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Krah, A.: Computational studies of F-type ATP synthases. Dissertation, 107 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Poppe, J.: Struktur und Funktionsweise des Molybdänspeicherproteins aus Azotobacter vinelandii. Dissertation, 176 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Rührer, S.: Etablierung eukaryotischer zellfreier Expressionssysteme für die Synthase humaner Membranproteine. Dissertation, 264 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Upadhyay, V.: Structural Characterizations of Two Tetrahydromethanopterin Binding Enzymes from Methanogenic Archaea. Dissertation, 105 S., Goethe-Universität, Fachbereich Biowissenschaften, Frankfurt am Main (2013)
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Hochschulschrift - Doktorarbeit
Weinert, T.: Strukturelle Grundlagen des Coenzym A vermittelten Aromatenabbaus. Dissertation, 132 S., Goethe-Universität, Fachbereich Biowissenschaften, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Doktorarbeit
Weiß, F.: Three-dimensional crystallization and biochemical characterization of a neurotransmitter sodium symporter homologue from Methanocaldococcus jannaschii. Dissertation, Goethe-Universität, Frankfurt am Main (2013)
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Hochschulschrift - Doktorarbeit
Wilk, L.: Function of plant photosystem II subunits in photoprotection. Dissertation, Goethe-Universität, Frankfurt am Main (2013)
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Hochschulschrift - Doktorarbeit
Zhang, C.: Characterization of Aquifex aeolicus F1F0 ATP synthase and its heterologous production in Escherichia coli. Dissertation, 170 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Diplom (5)

2013
Hochschulschrift - Diplom
Eisel, B.: Characterization of novel inhibitors of ATP synthases against patho-genic bacteria. Diplom, Goethe-Universität, Frankfurt am Main (2013)
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Hochschulschrift - Diplom
Faust, B. R.: Structural and functional investigation of substrate and co-substrate binding to the Na+/betaine symporter BetP from Corynebacterium glutamicum. Diplom, Goethe-Universität, Frankfurt am Main (2013)
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Hochschulschrift - Diplom
Schanzenbächer, C.: A functional proteomics approach for the analysis of plasticity-induced proteins in the rodent hippocampus. Diplom, 105 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Diplom
Trefz, M.: Die RP-HPLC-basierte Aktivitätsbestimmung der Phosphatidylcholin-Synthase pathogener Bakterien. Diplom, Technische Universität Darmstadt, Darmstadt (2013)
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Hochschulschrift - Diplom
Trenker, R.: Purification and characterization of chemoattractant receptors and ligands. Diplom, 121 S., Goethe-Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Master (3)

2013
Hochschulschrift - Master
Jäger, K. J.: Structural and functional characterization of cholesterol-dependent cytolysins. Master, Technische Universität, Darmstadt (2013)
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Hochschulschrift - Master
Moldovan, R.: Mass spectrometric analysis of lipids from selected membrane proteins. Master, 60 S., Goethe Universität, Fachbereich Biochemie, Chemie und Pharmazie, Frankfurt am Main (2013)
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Hochschulschrift - Master
Sangoju, D.: Computational Studies of Sodium-coupled Osmoregulated Betaine Transporter (BetP). Master, 77 S., Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany (2013)
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Hochschulschrift - Bachelor (5)

2013
Hochschulschrift - Bachelor
Danner, E.: Characterization of the Na+/H+ Antiporter of Helicobacter pylori using Solid-Supported Membrane based electrophysiology. Bachelor, 57 S., Goethe-Universität, Fachbereich Physik, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Bachelor
Hering, J.: Production, purification and functional characterisation of the G protein-coupled receptor binding angiotensin II. Bachelor, 47 S., Technische Universität Darmstadt, Darmstadt (2013)
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Hochschulschrift - Bachelor
Karimi, K.: Strukturuntersuchung von Listeriolysin O auf künstlichen Membranen mittels Elektronenmikroskopie. Bachelor, Goethe-Universität, Frankfurt am Main (2013)
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Hochschulschrift - Bachelor
Kokic, M. D.: A Solid Supported Membrane based Electrophysiological Study of the Escherichia coli NhaA variant E241C. Bachelor, 30 S., Goethe-Universität, Fachbereich Physik, Institut für Biophysik, Frankfurt am Main, Germany (2013)
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Hochschulschrift - Bachelor
Wagle, B.: Functional analysis of calcium-dependent binding of tescalcin to the human Na+/H+ exchanger isoform 1 (NHE1). Bachelor, Goethe-Universität, Frankfurt am Main (2013)
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