Publikationen des Max-Planck-Institutes für Biophysik
Zeitschriftenartikel (3133)
2024
Zeitschriftenartikel
90, 102284 (2024)
In vitro dynamics of DNA loop extrusion by structural maintenance of chromosomes complexes. Current Opinion in Genetics & Development
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31 (11), S. 1769 - 1777 (2024)
Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase. Nature Structural & Molecular Biology
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386 (6723), S. 768 - 776 (2024)
Pathogenic proteotoxicity of cryptic splicing is alleviated by ubiquitination and ER-phagy. Science
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Refined Protein-Sugar Interactions in the Martini Force Field. Journal of Chemical Theory and Computation (2024)
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Iron-Induced Lipid Oxidation Alters Membrane Mechanics Favoring Permeabilization. Langmuir (2024)
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Structure of an ex vivoDrosophila TOM complex determined by single-particle cryoEM. IUCrJ (2024)
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187 (2024)
IRGQ-mediated autophagy in MHC class I quality control promotes tumor immune evasion. Cell
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52 (19), gkae730, S. 11466 - 11480 (2024)
A plant-specific clade of serine/arginine-rich proteins regulates RNA splicing homeostasis and thermotolerance in tomato. Nucleic Acids Research
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121 (44), e2408071121 (2024)
Intrinsically disordered region amplifies membrane remodeling to augment selective ER-phagy. Proceedings of the National Academy of Sciences of the United States of America
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Elemental mapping in single-particle reconstructions by reconstructed electron energy-loss analysis. Nature Methods (2024)
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14, 25192 (2024)
Nanoelectrospray based synthesis of large, transportable membranes with integrated membrane proteins. Scientific Reports
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436 (20), 168734 (2024)
The phosphatase RosC from Streptomyces davaonensis is used for roseoflavin biosynthesis and has evolved to largely prevent dephosphorylation of the important cofactor riboflavin-5'-phosphate. Journal of Molecular Biology
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186 (1), 184388 (2024)
A comparison of lipid diffusive dynamics in monolayers and bilayers in the context of interleaflet coupling. Biochimica et Biophysica Acta: BBA
Zeitschriftenartikel
Integrated multi-omics analysis of PBX1 in mouse adult neural stem- and progenitor cells identifies a transcriptional module that functionally links PBX1 to TCF3/4. Nucleic Acids Research, gkae864 (2024)
Zeitschriftenartikel
300 (10), 107766 (2024)
Osmotic stress induces formation of both liquid condensates and amyloids by a yeast prion domain. Journal of Biological Chemistry
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1866 (1), 149512 (2024)
Assessment of amino acid charge states based on cryo-electron microscopy and molecular dynamics simulations of respiratory complex I. Biochimica et Biophysica Acta (BBA) - Bioenergetics
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Feeding cancer to death - a triad of aromatic acids reduces tumor growth. Cell Death & Differentiation (2024)
Zeitschriftenartikel
15, 7939 (2024)
The aryl hydrocarbon receptor and FOS mediate cytotoxicity induced by Acinetobacter baumannii. Nature Communications
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385 (6713), S. 1086 - 1090 (2024)
In situ structure and rotary states of mitochondrial ATP synthase in whole Polytomella cells. Science
Zeitschriftenartikel
Structure of tetrameric forms of the serotonin-gated 5-HT3A receptor ion channel. The EMBO Journal (2024)
Zeitschriftenartikel
75, 103211 (2024)
Ferroptosis in health and disease. Redox Biology: an official journal of the Society for Free Radical Biology and Medicine
Zeitschriftenartikel
Serine ubiquitination of SQSTM1 regulates NFE2L2-dependent redox homeostasis. Autophagy (2024)
Zeitschriftenartikel
436 (17), 168546 (2024)
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. Journal of Molecular Biology
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15, 7518 (2024)
Interdomain-linkers control conformational transitions in the SLC23 elevator transporter UraA. Nature Communications
Zeitschriftenartikel
436, 168574 (2024)
Selective autophagy of macromolecular complexes: what does it take to be taken? Journal of Molecular Biology
Zeitschriftenartikel
436, 168692 (2024)
Molecular Mechanisms and Physiological Functions of Autophagy. Journal of Molecular Biology
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15 (1), 6010 (2024)
Nanosecond chain dynamics of single-stranded nucleic acids. Nature Communications
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32 (7), S. 979 - 988.e4 (2024)
Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism. Structure
Zeitschriftenartikel
300 (7), 107457 (2024)
Arid5a uses disordered extensions of its core ARID domain for distinct DNA- and RNA-recognition and gene regulation. Journal of Biological Chemistry
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31, S. 1105 - 1113 (2024)
The palisade layer of the poxvirus core is composed of flexible A10 trimers. Nature Structural & Molecular Biology
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11, S. 5172 - 5184 (2024)
A Cu(ii) pseudopeptide complex: a surrogate to a formal Cu(iii) species in water and an inhibitor of cancer cell proliferation. Inorganic Chemistry Frontiers
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630, S. 501 - 508 (2024)
Molecular mechanism of choline and ethanolamine transport in humans. Nature
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15, 4783 (2024)
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature Communications
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15, 4700 (2024)
Lipid unsaturation promotes BAX and BAK pore activity during apoptosis. Nature Communications
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63, e202402498 (2024)
Structure and internal dynamics of short RNA duplexes determined by a combination of pulsed EPR methods and MD simulations. Angewandte Chemie, International Edition in English
Zeitschriftenartikel
33 (6), e5018 (2024)
Mutational and structural studies of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism. Protein Science
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7 (8), e202402608 (2024)
Nanobodies as novel tools to monitor the mitochondrial fission factor Drp1. Life science alliance
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15 (20), S. 5344 - 5349 (2024)
Energetics of the Transmembrane Peptide Sorting by Hydrophobic Mismatch. The Journal of Physical Chemistry Letters
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84 (10), S. 1980 - 1994.e8 (2024)
Autophagy preferentially degrades non-fibrillar polyQ aggregates. Molecular Cell
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5 (5), 101960 (2024)
Thalidomide derivatives degrade BCL-2 by reprogramming the binding surface of CRBN. Cell Reports Physical Science
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15, 3992 (2024)
High-confidence 3D template matching for cryo-electron tomography. Nature Communications
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10 (17), eadk6285 (2024)
Thinner is not always better: Optimizing cryo-lamellae for subtomogram averaging. Science Advances
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31, S. 683 - 698.e7 (2024)
A dual-targeting succinate dehydrogenase and F1Fo-ATP synthase inhibitor rapidly sterilizes replicating and non-replicating Mycobacterium tuberculosis. Cell Chemical Biology
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160 (2-3), S. 87 - 96 (2024)
The synergy between the PscC subunits for electron transfer to the P840 special pair in Chlorobaculum tepidum. Photosynthesis Research
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15, 3269 (2024)
Mechanism and structural dynamics of sulfur transfer during de novo [2Fe-2S] cluster assembly on ISCU2. Nature Communications
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121 (14), e2315568121 (2024)
Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis. PNAS
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11 (1), S. 60 - 71 (2024)
Extracting thermodynamic properties from van ’t Hoff plots with emphasis on temperature-sensing ion channels. Temperature
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628 (8008), S. 657 - 663 (2024)
Structure and assembly of a bacterial gasdermin pore. Nature
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160, 114111 (2024)
Encoding prior knowledge in ensemble refinement. The Journal of Chemical Physics
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128 (10), S. 2304 - 2316 (2024)
Role of Protonation States in the Stability of Molecular Dynamics Simulations of High-Resolution Membrane Protein Structures. The Journal of Physical Chemistry B
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20 (5), S. 2246 - 2260 (2024)
Hierarchical Assembly of Single-Stranded RNA. Journal of Chemical Theory and Computation
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121 (11), e2314199121 (2024)
Mechanism of proton-powered c-ring rotation in a mitochondrial ATP synthase. PNAS
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84 (5), S. 867 - 882.e5 (2024)
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils. Molecular Cell
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436 (5), 168447 (2024)
Vibrational Study of the Inward Proton Pump Xenorhodopsin NsXeR: Switch Order Determines Vectoriality. Journal of Molecular Biology
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26 (3), S. 378 - 392 (2024)
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature Cell Biology
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80, S. 159 - 173 (2024)
Using cryo-EM to understand the assembly pathway of respiratory complex I. Acta Crystallographica Section D: Structural Biology
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55, S. 207 - 218 (2024)
Time-Resolved EPR Spectroscopy of Channelrhodopsin-2 Helix B Movements. Applied Magnetic Resonance
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187 (5), S. 1296 - 1311.e26 (2024)
Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries. Cell
Zeitschriftenartikel
53 (7), S. 3327 - 3349 (2024)
Intracellular microbial rhodopsin-based optogenetics to control metabolism and cell signaling. Chemical Society Reviews
Zeitschriftenartikel
121 (9), e2318046121 (2024)
Mechanism and cellular function of direct membrane binding by the ESCRT and ERES-associated Ca2+-sensor ALG-2. Proceedings of the National Academy of Sciences of the United States of America
Zeitschriftenartikel
7 (2), S. 528 - 534 (2024)
Nanoporous Membranes of Densely Packed Carbon Nanotubes Formed by Lipid-Mediated Self-Assembly. ACS applied bio materials
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19 (2), S. 563 - 574 (2024)
Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. ACS Chemical Biology
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15, 1445 (2024)
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2. Nature Communications
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10 (6), eadj8027 (2024)
Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore. Science Advances
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223 (2), e202304030 (2024)
hGRAD: A versatile "one-fits-all" system to acutely deplete RNA binding proteins from condensates. Journal of Cell Biology
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11, S. 634 - 641 (2024)
Exploring Rotational Diffusion with Plasmonic Coupling. ACS Photonics
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187 (3), S. 545 - 562 (2024)
Understanding the cell: Future views of structural biology. Cell
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84 (3), S. 404 - 408 (2024)
AlphaFold: Research accelerator and hypothesis generator. Molecular Cell
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19 (2), S. 226 - 236 (2024)
A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower. Nature Nanotechnology
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13, e84617 (2024)
Structure of the two-component S-layer of the archaeon Sulfolobus acidocaldarius. eLife
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12, RP90174 (2024)
Tracing the substrate translocation mechanism in P-glycoprotein. eLife
Zeitschriftenartikel
15 (1), 205 (2024)
VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticity. Nature Communications
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15 (1), 65 (2024)
Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins. Nature Communications
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29 (1), S. 64 - 71 (2024)
Promotion of oxidative phosphorylation by complex I-anchored carbonic anhydrases? Trends in Plant Science
Zeitschriftenartikel
31 (1), S. 150 - 158 (2024)
Structural insights into the iron nitrogenase complex. Nature Structural & Molecular Biology
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52 (1), gkad1065, S. 87 - 100 (2024)
RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy. Nucleic Acids Research 2023
Zeitschriftenartikel
12, RP88836 (2023)
Unveiling the domain-specific and RAS isoform-specific details of BRAF kinase regulation. eLife
Zeitschriftenartikel
19 (24), S. 9060 - 9076 (2023)
Molecular Free Energies, Rates, and Mechanisms from Data-Efficient Path Sampling Simulations. Journal of Chemical Theory and Computation
Zeitschriftenartikel
12 (12), S. 3521 - 3530 (2023)
Machine Learning-Supported Enzyme Engineering toward Improved CO2-Fixation of Glycolyl-CoA Carboxylase. ACS Synthetic Biology
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83, S. 4318 - 4333 (2023)
Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Molecular Cell
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19 (23), S. 8919 - 8929 (2023)
Neighbor List Artifacts in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation
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85, 102258 (2023)
Protein condensates as flexible platforms for membrane traffic. Current Opinion in Cell Biology
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186 (24), S. 5411 - 5427.e23 (2023)
The proteomic landscape of synaptic diversity across brain regions and cell types. Cell
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14 (1), 7197 (2023)
Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. Nature Communications
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39 (44), S. 15553 - 15562 (2023)
Adsorbing DNA to Mica by Cations: Influence of Valency and Ion Type. Langmuir
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597, S. 2728 - 2738 (2023)
Autophagy as a caretaker of nuclear integrity. FEBS Letters
Zeitschriftenartikel
79 (11), S. 1010 - 1017 (2023)
Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography. Acta Crystallographica Section D: Structural Biology
Zeitschriftenartikel
30 (11), S. 1686 - 1694 (2023)
Conformational coupling of redox-driven Na+-translocation in Vibrio cholerae NADH:quinone oxidoreductase. Nature Structural & Molecular Biology
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30 (11), S. 1774 - 1785 (2023)
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments. Nature Structural & Molecular Biology
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19 (20), S. 7387 - 7404 (2023)
Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of Chemical Theory and Computation
Zeitschriftenartikel
13, 1519 (2023)
Ethoxylate Polymer-Based 96-Well Screen for Protein Crystallization. Crystals
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14, 6543 (2023)
Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR. Nature Communications
Zeitschriftenartikel
145 (40), S. 21832 - 21840 (2023)
Assessing the Role of R120 in the Gating of Cr ChR2 by Time-Resolved Spectroscopy from Femtoseconds to Seconds. Journal of the American Chemical Society
Zeitschriftenartikel
84, 102368 (2023)
Ubiquitination and cell-autonomous immunity. Current Opinion in Immunology
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14, 5979 (2023)
Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II. Nature Communications
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12 (10), 1276 (2023)
Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes. Biology
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14, 1261180 (2023)
Preparing Arabidopsis thaliana root protoplasts for cryo electron tomography. Frontiers in Plant Science
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52 (18), S. 6497 - 6553 (2023)
Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation. Chemical Society Reviews
Zeitschriftenartikel
108 (3), 035307 (2023)
Efficient generation of random rotation matrices in four dimensions. Physical Review E