Publikationen des Max-Planck-Institutes für Biophysik

Publikationen des Max-Planck-Institutes für Biophysik

Zeitschriftenartikel (54)

2018
Zeitschriftenartikel
Schöneberg, J.; Pavlin, M. R.; Yan, S.; Righini, M.; Lee, I.-H.; Carlson, L.-A.; Bahrami, A. H.; Goldman, D. H.; Ren, X.; Hummer, G. et al.; Bustamante, C.; Hurley, J. H.: ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. Science 362 (6421), S. 1423 - 1428 (2018)
Zeitschriftenartikel
Poppe, J.; Brünle, S.; Hail, R.; Wiesemann, K.; Schneider, K.; Ermler, U.: The Molybdenum Storage Protein: A soluble ATP hydrolysis‐dependent molybdate pump. The FEBS Journal 285 (24), S. 4602 - 4616 (2018)
Zeitschriftenartikel
Grotz, K. K.; Nueesch, M. F.; Holmstrom, E. D.; Heinz, M.; Stelzl, L. S.; Schuler, B.; Hummer, G.: Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments. The Journal of Physical Chemistry B 122 (49), S. 11626 - 11639 (2018)
Zeitschriftenartikel
Brünle, S.; Poppe, J.; Hail, R.; Demmer, U.; Ermler, U.: The molybdenum storage protein - A bionanolab for creating experimentally alterable polyoxomolybdate clusters. Journal of Inorganic Biochemistry 189 (12), S. 172 - 179 (2018)
Zeitschriftenartikel
Liu, W.; Liu, A.; Gao, H.; Wang, Q.; Wang, L.; Warkentin, E.; Rao, Z.; Michel, H.; Peng, G.: Structural properties of the peroxiredoxin AhpC2 from the hyperthermophilic eubacterium Aquifex aeolicus. Biochimica et Biophysica Acta (BBA) - General Subjects 1862 (12), S. 2797 - 2805 (2018)
Zeitschriftenartikel
Seyfried, P.; Heinz, M.; Pintér, G.; Klötzner, D.-P.; Becker, Y.; Bolte, M.; Jonker, H. R. A.; Stelzl, L. S.; Hummer, G.; Schwalbe, H. et al.; Heckel, A.: Optimal Destabilization of DNA Double Strands by Single-Nucleobase Caging. Chemistry – A European Journal 24 (66), S. 17568 - 17576 (2018)
Zeitschriftenartikel
Wagner , T.; Huang, G.; Ermler, U.; Shima, S.: How [Fe]-Hydrogenase from Methanothermobacter is Protected Against Light and Oxidative Stress. Angewandte Chemie International Edition in English 57 (46), S. 15056 - 15059 (2018)
Zeitschriftenartikel
Bock, C.; Löhr, F.; Tumulka, F.; Reichel, K.; Würz, J.; Hummer, G.; Schäfer, L.; Tampé, R.; Joseph, B.; Bernhard, F. et al.; Dötsch, V.; Abele, R.: Structural and functional insights into the interaction and targeting hub TMD0 of the polypeptide transporter TAPL. Scientific Reports 8, 15662 (2018)
Zeitschriftenartikel
Rossini, E.; Gajewski, J.; Klaus, M.; Hummer, G.; Grininger, M.: Analysis and engineering of substrate shuttling by the acyl carrier protein (ACP) in fatty acid synthases (FASs). Chemical Communications 54 (82), S. 11606 - 11609 (2018)
Zeitschriftenartikel
Reiter, S.; Hülsdunk, P.; Woo, T.; Eberle, J. S.; Akay, L. A.; Longo, A.; Meier-Credo, J.; Kretschmer, F.; Langer, J. D.; Kaschube, M. et al.; Laurent, G.: Elucidating the control and development of skin patterning in cuttlefish. Nature 562 (7727), S. 361 - 366 (2018)
Zeitschriftenartikel
Reichel, K.; Stelzl, L. S.; Köfinger, J.; Hummer, G.: Precision DEER Distances from Spin-Label Ensemble Refinement. The Journal of Physical Chemistry Letters 9 (18), S. 5748 - 5752 (2018)
Zeitschriftenartikel
Parey, K.; Brandt, U.; Xie, H.; Mills, D. J.; Siegmund, K.; Vonck, J.; Kühlbrandt, W.; Zickermann, V.: Cryo-EM structure of respiratory complex I at work. eLife 7, e39213 (2018)
Zeitschriftenartikel
Cossio, P.; Allegretti, M.; Mayer, F.; Müller, V.; Vonck, J.; Hummer, G.: Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase. Microscopy 67 (5), S. 266 - 273 (2018)
Zeitschriftenartikel
Lans, I.; Seco, J.; Serrano, A.; Burbano, R.; Cossio, P.; Daza, M. C.; Medina, M.: The Dimer-of-Trimers Assembly Prevents Catalysis at the Transferase Site of Prokaryotic FAD Synthase. Biophysical Journal 115 (6), S. 988 - 995 (2018)
Zeitschriftenartikel
Warnau, J.; Sharma, V.; Gamiz-Hernandez, A. P.; Di Luca, A.; Haapanen, O.; Vattulainen, I.; Wilkström, M.; Hummer, G.; Kaila, V. R. I.: Redox-coupled quinone dynamics in the respiratory complex I. Proceedings of the National Academy of Sciences of the United States of America 115 (36), S. E8413 - E8420 (2018)
Zeitschriftenartikel
Hofbauer, H. F.; Gecht, M.; Fischer, S. C.; Seybert, A.; Frangakis, A. S.; Stelzer, E. H. K.; Covino, R.; Hummer, G.; Ernst, R.: The molecular recognition of phosphatidic acid by an amphipathic helix in Opi1. The Journal of Cell Biology: JCB 217 (9), S. 3109 - 3126 (2018)
Zeitschriftenartikel
Birch, J.; Axford, D.; Foadi, J.; Meyer, A.; Eckhardt, A.; Thielmann, Y.; Moraes, I.: The fine art of integral membrane protein crystallization. Methods 147, S. 150 - 162 (2018)
Zeitschriftenartikel
Vögele, M.; Köfinger, J.; Hummer, G.: Molecular dynamics simulations of carbon nanotube porins in lipid bilayers. Faraday Discussions 209, S. 341 - 358 (2018)
Zeitschriftenartikel
Cruz-León, S.; Vázquez-Mayagoitia, A.; Melchionna, S.; Schwierz, N.; Fyta, M.: Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations. The Journal of Physical Chemistry B 122 (32), S. 7915 - 7928 (2018)
Zeitschriftenartikel
Gränz, M.; Erlenbach, N.; Spindler, P.; Gophane, D. B.; Stelzl, L. S.; Sigurdsson, S. T.; Prisner, T. F.: Dynamics of Nucleic Acids at Room Temperature Revealed by Pulsed EPR Spectroscopy. Angewandte Chemie International Edition 57 (33), S. 10540 - 10543 (2018)
Zeitschriftenartikel
Covino, R.; Hummer, G.; Ernst, R.: Integrated Functions of Membrane Property Sensors and a Hidden Side of the Unfolded Protein Response. Molecular Cell 71 (3), S. 458 - 467 (2018)
Zeitschriftenartikel
Kehrer, J.; Kuss, C.; Andres-Pons, A.; Reustle, A.; Dahan, N.; Devos, D.; Kudryashev, M.; Beck, M.; Mair, G. R.; Frischknecht, F.: Nuclear Pore Complex Components in the Malaria Parasite Plasmodium Berghei. Scientific Reports 8, 11249 (2018)
Zeitschriftenartikel
Vögele, M.; Köfinger, J.; Hummer, G.: Hydrodynamics of Diffusion in Lipid Membrane Simulations. Physical Review Letters 120 (26), 268104 (2018)
Zeitschriftenartikel
Dörrbaum, A. R.; Kochen, L.; Langer, J. D.; Schuman, E. M.: Local and global influences on protein turnover in neurons and glia. eLife 7, e34202 (2018)
Zeitschriftenartikel
De Vos, O.; Venable, R. M.; Van Hecke, T.; Hummer, G.; Pastor, R. W.; Ghysels, A.: Membrane Permeability: Characteristic Times and Lengths for Oxygen and a Simulation-Based Test of the Inhomogeneous Solubility-Diffusion Model. Journal of Chemical Theory and Computation 14 (7), S. 3811 - 3824 (2018)
Zeitschriftenartikel
Linke, M.; Köfinger, J.; Hummer, G.: Rotational Diffusion Depends on Box Size in Molecular Dynamics Simulations. The Journal of Physical Chemistry Letters 9 (11), S. 2874 - 2878 (2018)
Zeitschriftenartikel
Linke, M.; Köfinger, J.; Hummer, G.: Fully Anisotropic Rotational Diffusion Tensor from Molecular Dynamics Simulations. The Journal of Physical Chemistry B 122 (21), S. 5630 - 5639 (2018)
Zeitschriftenartikel
Vinayagam, D.; Mager, T.; Apelbaum, A.; Bothe, A.; Merino, F.; Hofnagel, O.; Gatsogiannis, C.; Raunser, S.: Electron cryo-microscopy structure of the canonical TRPC4 ion channel. eLife 7, e36615 (2018)
Zeitschriftenartikel
Mager, T. M.-H.; Lopez de la Morena, D.; Senn, V.; Schlotte, J.; D´Errico, A.; Feldbauer, K.; Wrobel, C.; Jung, S.; Bodensiek, K.; Rankovic, V. et al.; Browne, L.; Huet, A.; Jüttner, J.; Wood, P. G.; Letzkus, J.; Moser, T.; Bamberg, E.: High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics. Nature Communications 9, 1750 (2018)
Zeitschriftenartikel
Peng, G.; Meyer, B.; Sokolova, L.; Liu, W.; Bornemann, S.; Juli, J.; Zwicker, K.; Karas, M.; Brutschy, B.; Michel, H.: Identification and characterization two isoforms of NADH:ubiquinone oxidoreductase from the hyperthermophilic eubacterium Aquifex aeolicus. Biochimica et Biophysica Acta, Bioenergetics 1859 (5), S. 366 - 373 (2018)
Zeitschriftenartikel
Sousa, J. S.; Calisto, F.; Langer, J. D.; Mills, D. J.; Refojo, P. N.; Teixeira, M.; Kühlbrandt, W.; Vonck, J.; Pereira, M. M.: Structural basis for energy transduction by respiratory alternative complex III. Nature Communications 9, 1728 (2018)
Zeitschriftenartikel
Eisinger, M. L.; Nie, L.; Dörrbaum, A. R.; Langer, J. D.; Michel, H.: The Xenobiotic Extrusion Mechanism of the MATE Transporter NorM_PS from Pseudomonas stutzeri. Journal of Molecular Biology (London) 430 (9), S. 1311 - 1323 (2018)
Zeitschriftenartikel
Huang, G.; Wagner, T.; Ermler, U.; Bill, E.; Ataka, K.; Shima, S.: Dioxygen Sensitivity of [Fe]‐Hydrogenase in the Presence of Reducing Substrates. Angewandte Chemie International Edition in English 57 (18), S. 4917 - 4920 (2018)
Zeitschriftenartikel
Groß, A. S.; Schulz, C.; Kolb, J.; Koster, J.; Wehner, S.; Czaplinski, S.; Khilan, A.; Rohrer, H.; Harter, P. N.; Klingebiel, T. et al.; Langer, J. D.; Geerts, D.: Tumorigenic and Antiproliferative Properties of the TALE-Transcription Factors MEIS2D and MEIS2A in Neuroblastoma. Cancer research: an official organ of the American Association for Cancer Research 78 (8), S. 1935 - 1947 (2018)
Zeitschriftenartikel
Ardevol, A.; Hummer, G.: Retinal isomerization and water-pore formation in channelrhodopsin-2. Proceedings of the National Academy of Sciences of the United States of America 115 (14), S. 3557 - 3562 (2018)
Zeitschriftenartikel
Cossio, P.; Hummer, G.: Likelihood-based structural analysis of electron microscopy images. Current Opinion in Structural Biology 49, S. 162 - 168 (2018)
Zeitschriftenartikel
Cossio, P.; Hummer, G.; Szabo, A.: Transition paths in single-molecule force spectroscopy. The Journal of Chemical Physics 148 (12), 123309 (2018)
Zeitschriftenartikel
Joedicke, L.; Mao, J.; Kuenze, G.; Reinhart, C.; Kalavacherla, T.; Jonker, H. R.A.; Richter, C.; Schwalbe, H.; Meiler, J.; Preu, J. et al.; Michel, H.; Glaubitz, C.: The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors. Nature Chemical Biology 13 (3), S. 284 - 290 (2018)
Zeitschriftenartikel
Rossini, E.; Bochevarov, A. D.; Knapp, E. W.: Empirical Conversion of pKa Values between Different Solvents and Interpretation of the Parameters: Application to Water, Acetonitrile, Dimethyl Sulfoxide, and Methanol. ACS Omega 3 (2), S. 1653 - 1662 (2018)
Zeitschriftenartikel
Mamatkulov, S.; Schwierz, N.: Force fields for monovalent and divalent metal cations in TIP3P water based on thermodynamic and kinetic properties. The Journal of Chemical Physics 148 (7), 074504 (2018)
Zeitschriftenartikel
Schanzenbächer, C. T.; Langer, J. D.; Schuman, E. M.: Time- and polarity-dependent proteomic changes associated with homeostatic scaling at central synapses. eLife 7, e33322 (2018)
Zeitschriftenartikel
Bahrami, A. H.; Weikl, T. R.: Curvature-Mediated Assembly of Janus Nanoparticles on Membrane Vesicles. Nano Letters 18 (2), S. 1259 - 1263 (2018)
Zeitschriftenartikel
Demmer, J. K.; Bertsch, J.; Öppinger, C.; Wohlers, H.; Kayastha, K.; Demmer, U.; Ermler, U.; Müller, V.: Molecular basis of the flavin‐based electron‐bifurcating caffeyl‐CoA reductase reaction. FEBS Letters 592 (3), S. 332 - 342 (2018)
Zeitschriftenartikel
Ramírez, A. S.; Boilevin, J.; Mehdipour, A. R.; Hummer, G.; Darbre, T.; Reymond, J.-L.; Locher, K. P.: Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase. Nature Communications 9, 445 (2018)
Zeitschriftenartikel
Dautant, A.; Meier, T.; Hahn, A.; Tribouillard-Tanvier, D.; di Rago, J.-P.; Kucharczyk, R.: ATP Synthase Diseases of Mitochondrial Genetic Origin. Frontiers in Physiology 9, 329 (2018)
Zeitschriftenartikel
Davies, K. M.; Blum, T. B.; Kühlbrandt, W.: Conserved in situ arrangement of complex I and III2 in mitochondrial respiratory chain supercomplexes of mammals, yeast, and plants. Proceedings of the National Academy of Sciences of the United States of America 115 (12), S. 3024 - 3029 (2018)
Zeitschriftenartikel
Davies, K. M.; Kühlbrandt, W.: Structure of the catalytic F1 head of the F1-Fo ATP synthase from Trypanosoma brucei. Proceedings of the National Academy of Sciences of the United States of America 115 (13), S. E2906 - E2907 (2018)
Zeitschriftenartikel
Eisel, B.; Hartrampf, F. W. W.; Meier, T.; Trauner, D.: Reversible Optical Control of F1F0-ATP Synthase Using Photoswitchable Inhibitors. FEBS Letters 592 (3), S. 343 - 355 (2018)
Zeitschriftenartikel
Frese, N.; Scherr, J.; Beyer, A.; Terfort, A.; Gölzhäuser, A.; Hampp, N.; Rhinow, D.: Multicomponent patterned ultrathin carbon nanomembranes by laser ablation. Applied Surface Science 427 (A), S. 126 - 130 (2018)
Zeitschriftenartikel
Gewering, T.; Januliene, D.; Ries, A. B.; Moeller, A.: Know your detergents: A case study on detergent background in negative stain electron microscopy. Journal of Structural Biology 203 (3), S. 242 - 246 (2018)
Zeitschriftenartikel
Hahn, A.; Vonck, J.; Mills, D. J.; Meier, T.; Kühlbrandt, W.: Structure, mechanism, and regulation of the chloroplast ATP synthase. Science 360 (6389), S. 1 - 10 (2018)
Zeitschriftenartikel
Kruse, K.; Salzer, R.; Joos, F.; Averhoff, B.: Functional dissection of the three N-terminal general secretory pathway domains and the Walker motifs of the traffic ATPase PilF from Thermus thermophilus. Extremophiles 22 (3), S. 461 - 471 (2018)
Zeitschriftenartikel
Sebastián, M.; Anoz-Carbonell, E.; Gracia, B.; Cossio, P.; Aínsa, J. A.; Lans, I.; Medina, M.: Discovery of antimicrobial compounds targeting bacterial type FAD synthetases. Journal of Enzyme Inhibition and Medicinal Chemistry 33 (1), S. 241 - 254 (2018)
Zeitschriftenartikel
Wang, S.; Powers, R. E.; Gold, V. A. M.: The ER morphology-regulating lunapark protein induces the formation of stacked bilayer discs. Life Science Alliance 1 (1), e201700014 (2018)

Buchkapitel (3)

2018
Buchkapitel
Kudryashev, M.: Resolution in Electron Tomography. In: Biological and Medical Physics, Biomedical Engineering (BIOMEDICAL), S. 261 - 282 (Hg. Hanson, E.). Springer International Publishing AG 2018, 6330 Cham Switzerland (2018)
Buchkapitel
Krasnoselska, G. O.; Meier, T.: Purification and Reconstitution of Ilyobacter tartaricus ATP Synthase. In: Methods in Molecular Biology (MIMB), Bd. 1805, S. 51 - 71 (Hg. Lavelle, C.). Humana Press, New York (2018)
Buchkapitel
Sousa, J. S.; D'Imprima, E.; Vonck, J.: Mitochondrial Respiratory Chain Complexes. In: Membrane Protein Complexes: Structure and Function, Bd. 87, S. 167 - 227 (Hg. Harris, J.). Springer, Singapore (2018)

Konferenzband (4)

2018
Konferenzband
CryoEM structures of ATP synthase (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). Elsevier, Amsterdam (2018)
Konferenzband
Structural basis for energy transduction by respiratory alternative complex III (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). 20th European Bioenergetics Conference, Budapest, 25. August 2018 - 30. August 2018. (2018)
Konferenzband
Cryo-EM structure of the alternative complex III from Rhodothermus marinus (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). (2018), 1 S.
Konferenzband
The cryo EM structure of respiratory complex I from Yarrowia lipolytica (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). Budapest, Hungary (2018), 01 S.

Konferenzbeitrag (2)

2018
Konferenzbeitrag
Heberle, J.; Lorenz-Fonfria, V.; Resler, T.; Schultz, B.; Schlesinger, R.; Bamann, C.; Bamberg, E.: Molecular mechanism of channelrhodopsin. 20th European Bioenergetics Conference , Budapest, Hungary, 25. August 2018 - 30. August 2018. Biochimica et Biophysica Acta, Bioenergetics 1859, e27, (2018)
Konferenzbeitrag
Michel, H.: Terminal oxidases of the heme-copper and bd oxidase type, a structural and functional comparison. 20th European Bioenergetics Conference, Budapest, Hungary, 25. August 2018 - 30. August 2018. Biochimica et Biophysica Acta, Bioenergetics 1859, e3, (2018)

Hochschulschrift - Doktorarbeit (3)

2018
Hochschulschrift - Doktorarbeit
Sommer, M.: Characterization of Secondary Active Transporters produced in Escherichia coli and the new Host Pseudomonas stutzeri. Dissertation, 209 S., Fachbereich Biochemie, Chemie und Pharmazie, Goethe Universität Frankfurt, Frankfurt am Main (2018)
Hochschulschrift - Doktorarbeit
D'Imprima, E.: Advanced image processing for Single Particle cryo-EM. Dissertation, Goethe-Universität, Frankfurt am Main (2018)
Hochschulschrift - Doktorarbeit
van Pee, K.: Structural and functional characterization of pore-forming proteins. Dissertation, Goethe-Universität, Frankfurt am Main (2018)

Hochschulschrift - Master (4)

2018
Hochschulschrift - Master
Quoika, P.: Thermodynamic and structural properties of dense protein solutions. Master, 145 S., Fachbereich Physik, Goethe-Universität Frankfurt, Frankfurt am Main (2018)
Hochschulschrift - Master
Sahebzade, A.: Expression, purifcation and structural characterization of the heterotetrameric NMDA receptor GluN1/GluN2D. Master, 101 S., Institut für Biochemie, Goethe Universität Frankfurt, Frankfurt am Main (2018)
Hochschulschrift - Master
Juli, J.: Solubilization experimental studies on the supercomplex formation of the respiratory complex Iin a hyperthermophilic bacterium Acquifex Aeolicus. Master, 83 S., Fachbereich Biowissenschaften, Goethe-Universität Frankfurt, Frankfurt am Main (2018)
Hochschulschrift - Master
Desch, K.: HDX-MS of Membrane Proteins: Structural Investigation of Respiratory Chain Complexes. Master, 66 S., Fachbereich Biochemie, Chemie und Pharmazie, Goethe Universität Frankfurt, Frankfurt am Main (2018)

Hochschulschrift - Bachelor (3)

2018
Hochschulschrift - Bachelor
Ibrahim, R.: Simplification for picking of protein crystals for high performance cooling and X-ray structure analysis. Bachelor, 56 S., Frankfurt University of Applied Sciences, Frankfurt am Main (2018)
Hochschulschrift - Bachelor
Hussein, T.: Untersuchung zu verschiedenen Offen- & Geschlossenzuständen in Channelrhodopsin-2. Bachelor, 56 S., Goethe-Universität, Frankfurt am Main (2018)
Hochschulschrift - Bachelor
Roy, S.: Integrating experimental data into replica simulations of biomolecules. Bachelor, 96 S., Goethe-Universität, Frankfurt am Main (2018)

Editorial (2)

2018
Editorial
Bamberg, E.; Gärtner, W.; Trauner, D.: Introduction: Optogenetics and Photopharmacology. Chemical Reviews 118 (21), S. 10627 - 10628 (2018)
Editorial
Kühlbrandt, W.; Briggs, J.: Editorial overview: Cryo electron microscopy: the impact of the cryo-EM revolution in biology. Current Opinion in Structural Biology 52, S. iii - v (2018)

Interview (1)

2018
Interview
Ausgezeichnet – Wie wird man Nobelpreisträger? (2018)
Zur Redakteursansicht