Zeitschriftenartikel (2052)

2020
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Fischer, M.; Joppe, M.; Mulinacci, B.; Vollrath, R.; Konstantinidis, K.; Kötter, P.; Ciccarelli, L.; Vonck, J.; Oesterhelt, D.; Grininger, M.: Analysis of the co-translational assembly of the fungal fatty acid synthase (FAS). Scientific Reports 10 (1), 895 (2020)
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Warnau, J.; Wöhlert, D.; Okazaki, K.-I.; Yildiz, Ö.; Gamiz-Hernandez, A. P.; Kaila, V. R. I.; Kühlbrandt, W.; Hummer, G.: Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation. The Journal of Physical Chemistry B 124 (2), S. 336 - 344 (2020)
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Pietrek, L. M.; Stelzl, L. S.; Hummer, G.: Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation 16 (1), S. 725 - 737 (2020)
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Shin, D.; Mukherjee, R.; Liu, Y.; Gonzalez, A.; Bonn, F.; Liu, Y.; Rogov, V. V.; Heinz, M.; Stolz, A.; Hummer, G. et al.; Dötsch, V.; Luo, Z.-Q.; Bhogaraju, S.; Đikić, I.: Regulation of Phosphoribosyl-Linked Serine Ubiquitination by Deubiquitinases DupA and DupB. Molecular Cell 77 (1), S. 164 - 179 (2020)
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Zhu, G.; Zeng, H.; Zang, S.; Juli, J.; Pang, X.; Hoffman, J.; Zhang, Y.; Morgner, N.; Zhu, Y.; Peng, G. et al.; Michel, H.; Sun, F.: A 3.3 Å‐Resolution Structure of Hyperthermophilic Respiratory Complex III Reveals the Mechanism of its Thermal Stability. Angewandte Chemie, International Edition in English 59 (1), S. 343 - 351 (2020)
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Gewering, T.: Klassifizierung von Antikörpern zur Behandlung von COVID-19. Biospektrum 26 (7), S. 750 (2020)
2019
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Brünle, S.; Eisinger, M. L.; Poppe, J.; Mills, D. J.; Langer, J. D.; Vonck, J.; Ermler, U.: Molybdate pumping into the molybdenum storage protein via an ATP-powered piercing mechanism. Proceedings of the National Academy of Sciences of the United States of America 52 (116), S. 26497 - 26504 (2019)
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Parey, K.; Haapanen, O.; Sharma, V.; Köfeler, H.; Züllig, T.; Prinz, S.; Siegmund, K.; Wittig, I.; Mills, D.; Vonck, J. et al.; Kühlbrandt, W.; Zickermann, V.: High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease. Science Advances 5 (12), S. eaax9484 (2019)
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Berman, H. M.; Adams, P. D.; Bonvin, A. A.; Burley, S. K.; Carragher, B.; Chiu, W.; DiMaio, F.; Ferrin, T. E.; Gabanyi, M. J.; Goddard, T. D. et al.; Griffin, P. R.; Haas, J.; Hanke, C. A.; Hoch, J. C.; Hummer, G.; Kurisu, G.; Lawson, C. L.; Leitner, A.; Markley, J. L.; Meiler, J.; Montelione, G. T.; Phillips, G. N.; Prisner, T.; Rappsilber, J.; Schriemer, D. C.; Schwede, T.; Seidel, C. A. M.; Strutzenberg, T. S.; Svergun, D. I.; Tajkhorshid, E.; Trewhella, J.; Vallat, B.; Velankar, S.; Vuister, G. W.; Webb, B.; Westbrook, J. D.; White, K. L.; Sali, A.: Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure 27 (12), S. 1745 - 1759 (2019)
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Mikušević, V.; Schrecker, M.; Kolesova, N.; Patiño-Ruiz, M.; Fendler, K.; Hänelt, I.: A channel profile report of the unusual K+ channel KtrB. Journal of General Physiology 151 (12), S. 1357 - 1368 (2019)
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Baldering, T. N.; Bullerjahn, J. T.; Hummer, G.; Heilemann, M.; Malkusch, S.: Molecule counts in complex oligomers with single-molecule localization microscopy. Journal of Physics D: Applied Physics 52 (47), 474002 (2019)
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Ehrenberg, D.; Krause, N.; Saita, M.; Bamann, C.; Kar, R. K.; Hoffmann, K.; Heinrich, D.; Schapiro, I.; Heberle, J.; Schlesinger, R.: Atomistic Insight into the Role of Threonine 127 in the Functional Mechanism of Channelrhodopsin-2. Applied Sciences 9 (22), 4905 (2019)
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Pohl, C.; Đikić, I.: Cellular quality control by the ubiquitin-proteasome system and autophagy. Science 366 (6467), S. 818 - 822 (2019)
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Herhaus, L.; Bhaskara, R.; Lystad, A. H.; Gestal-Mato, U.; Covarrubias-Pinto, A.; Bonn, F.; Simonsen, A.; Hummer, G.; Đikić, I.: TBK1-mediated phosphorylation of LC3C and GABARAP-L2 controls autophagosome shedding by ATG4 protease. EMBO Reports 21 (1), e48317 (2019)
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Lencina, A. M.; Koepke, J.; Preu, J.; Münke, C.; Gennis, R. B.; Michel, H.; Schurig-Briccio, L. A.: Characterization and X-ray structure of the NADH-dependent coenzyme A disulfide reductase from Thermus thermophilus. Biochimica et Biophysica Acta, Bioenergetics 1860 (11), e148080 (2019)
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Pfeil-Gardiner, O.; Mills, D. J.; Vonck, J.; Kuehlbrandt, W.: A comparative study of single-particle cryo-EM with liquid-nitrogen and liquid-helium cooling. IUCrJ 6, S. 1099 - 1105 (2019)
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Wang, X.; You, X.; Langer, J. D.; Hou, J.; Rupprecht, F.; Vlatkovic, I.; Quedenau, C.; Tushev, G.; Epstein, I.; Schaefke, B. et al.; Sun , W.; Fang, L.; Li, G.; Hu , Y.; Schuman, E. M.; Chen, W.: Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus. Nature Communications 10, 5009 (2019)
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Bratanov, D.; Kovalev, K.; Machtens, J.-P.; Astashkin, R.; Chizhov, I.; Soloviov, D.; Volkov, D.; Polovinkin, V.; Zabelskii, D.; Mager, T. et al.; Gushchin, I.; Rokitskaya, T.; Antonenko, Y.; Alekseev, A.; Shevchenko, V.; Yutin, N.; Rosselli, R.; Baeken, C.; Borshchevskiy, V.; Bourenkov, G.; Popov, A.; Balandin, T.; Büldt, G.; Manstein, D. J.; Rodriguez-Valera, F.; Fahlke, C.; Bamberg, E.; Koonin, E.; Gordeliy, V.: Unique structure and function of viral rhodopsins. Nature Communications 10, 4939 (2019)
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Patiño-Ruiz, M.; Fendler, K.; Călinescu, O.: Mutation of two key aspartate residues alters stoichiometry of the NhaB Na+/H+ exchanger from Klebsiella pneumoniae. Scientific Reports 9, 15390 (2019)
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Kim, G.; Shin, D.; Lee, S.; Yun, J.; Lee, S.: Crystal Structure of IlvC, a Ketol-Acid Reductoisomerase, from Streptococcus Pneumoniae. Crystals 9 (11), 551 (2019)
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Hampoelz, B.; Schwarz, A.; Ronchi, P.; Bragulat-Teixidor, H.; Tischer, C.; Gaspar, I.; Ephrussi, A.; Schwab, Y.; Beck, M.: Nuclear Pores Assemble from Nucleoporin Condensates During Oogenesis. Cell 179 (3), S. 671 - 686.e17 (2019)
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Siggel, M.; Bhaskara, R. M.; Hummer, G.: Phospholipid Scramblases Remodel the Shape of Asymmetric Membranes. The Journal of Physical Chemistry Letters 10 (20), S. 6351 - 6354 (2019)
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Ruesink, H.; Reimer, L.; Gregersen, E.; Möller, A.; Betzer, C.; Jensen, P. H.: Stabilization of α-synuclein oligomers using formaldehyde. PLoS One 14 (10), e0216764 (2019)
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Safarian, S.; Hahn, A.; Mills, D.; Radloff, M.; Eisinger, M. L.; Nikolaev, A.; Meier-Credo, J.; Melin, F.; Miyoshi, H.; Gennis, R.B. et al.; Sakamoto, J.; Langer, J. D.; Hellwig, P.; Kühlbrandt, W.; Michel, H.: Active site rearrangement and structural divergence in prokaryotic respiratory oxidases. Science 366 (6461), S. 100 - 104 (2019)
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Covino, R.; Woodside, M. T.; Hummer, G.; Szabo, A.; Cossio, P.: Molecular free energy profiles from force spectroscopy experiments by inversion of observed committors. The Journal of Chemical Physics 151 (15), 154115 (2019)
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Schwarz, A.; Beck, M.: The Benefits of Cotranslational Assembly: A Structural Perspective. Trends in Cell Biology 29 (10), S. 791 - 803 (2019)
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Degl'Innocenti, A.; Meloni, G.; Mazzolai, B.; Ciofani, G.: A purely bioinformatic pipeline for the prediction of mammalian odorant receptor gene enhancers. BMC Bioinformatics 20 (1), 474 (2019)
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Bhattacharjee, A. S.; Konakamchi, S.; Turaev, D.; Vincis, R.; Nunes, D.; Dingankar, A. A.; Spors, H.; Carleton, A.; Kuner, T.; Abraham, N. M.: Similarity and Strength of Glomerular Odor Representations Define a Neural Metric of Sniff-Invariant Discrimination Time. Cell Reports 28 (11), S. 2966 - 2978 (2019)
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Linker, S. M.; Magarkar, A.; Köfinger, J.; Hummer, G.; Seeliger, D.: Fragment Binding Pose Predictions Using Unbiased Simulations and Markov-State Models. Journal of Chemical Theory and Computation 15 (9), S. 4974 - 4981 (2019)
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Nishimura, T.; Gecht, M.; Covino, R.; Hummer, G.; Surma, M. A.; Klose, C.; Arai, H.; Kono, N.; Stefan, C. J.: Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis. Molecular Cell 75 (5), S. 1043 - 1057 (2019)
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Ochoa, R.; Laio, A.; Cossio, P.: Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations. Journal of Chemical Information and Modeling 59 (8), S. 3464 - 3473 (2019)
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Kourpa, K.; Manarolaki, E.; Lyratzakis, A.; Strataki, V.; Rupprecht, F. A.; Langer, J. D.; Tsiotis, G.: Proteome Analysis of Enriched Heterocysts from Two Hydrogenase Mutants from Anabaena sp. PCC 7120. Proteomics 19 (19), 1800332 (2019)
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Bhogaraju, S.; Bonn, F.; Mukherjee, R.; Adams, M.; Pfleiderer, M. M.; Galej, W. P.; Matkovic, V.; Lopez-Mosqueda, J.; Kalayil, S.; Shin, D. et al.; Đikić, I.: Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation. Nature 572 (7769), S. 382 - 386 (2019)
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Henderson, R. K.; Fendler, K.; Poolman, B.: Coupling efficiency of secondary active transporters. Current Opinion in Biotechnology 58, S. 62 - 71 (2019)
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Bahrami, A.; Bahrami, A. H.: Vesicle constriction by rings of Janus nanoparticles and aggregates of curved proteins. Nanotechnology 30 (34), 345101 (2019)
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Hofmann, S.; Januliene, D.; Mehdipour, A. R.; Thomas, C.; Stefan, E.; Brüchert, S.; Kuhn, B. T.; Geertsma, E. R.; Hummer, G.; Tampé, R. et al.; Möller, A.: Conformation space of a heterodimeric ABC exporter under turnover conditions. Nature 571 (7766), S. 580 - 583 (2019)
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Faelber, K.; Dietrich, L.; Noel, J. K.; Wollweber, F.; Pfitzner, A.-K.; Mühleip, A.; Sánchez, R.; Kudryashev, M.; Chiaruttini, N.; Lilie, H. et al.; Schlegel, J.; Rosenbaum, E.; Hessenberger, M.; Matthaeus, C.; Kunz, S.; von der Malsburg, A.; Noè, F.; Roux, A.; van der Laan, M.; Kühlbrandt, W.; Daumke, O.: Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1. Nature 571 (7765), S. 429 - 433 (2019)
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Timcenko, M.; Lyons, J. A.; Januliene, D.; Ulstrup, J. J.; Dieudonné, T.; Montigny, C.; Ash, M.-R.; Karlsen, J. L.; Boesen, T.; Kühlbrandt, W. et al.; Lenoir, G.; Möller, A.; Nissen, P.: Structure and autoregulation of a P4-ATPase lipid flippase. Nature 571 (7765), S. 366 - 370 (2019)
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Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Membrane perforation by the pore-forming toxin pneumolysin. Proceedings of the National Academy of Sciences of the United States of America 116 (27), S. 13352 - 13357 (2019)
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Bausewein, T.; Nussberger, S.; Kühlbrandt, W.: Cryo-EM structure of Neurospora crassa respiratory complex IV. IUCrJ 6 (4), S. 773 - 780 (2019)
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Scherr, J.; Neuhaus, A.; Parey, K.; Klusch, N.; Murphy, B. J.; Zickermann, V.; Kühlbrandt, W.; Terfort, A.; Rhinow, D.: Noncovalent Functionalization of Carbon Substrates with Hydrogels Improves Structural Analysis of Vitrified Proteins by Electron Cryo-Microscopy. ACS Nano 13 (6), S. 7185 - 7190 (2019)
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Murphy, B. J.; Klusch, N.; Langer, J. D.; Mills, D.; Yildiz, Ö.; Kühlbrandt, W.: Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling. Science 364 (6446), eaaw9128, S. 1155 (2019)
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Vögele, M.; Köfinger, J.; Hummer, G.: Finite-Size-Corrected Rotational Diffusion Coefficients of Membrane Proteins and Carbon Nanotubes from Molecular Dynamics Simulations. The Journal of Physical Chemistry B 123 (24), S. 5099 - 5106 (2019)
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Zakrzewska, S.; Mehdipour, A. R.; Malviya, V. N.; Nonaka, T.; Koepke, J.; Muenke, C.; Hausner, W.; Hummer, G.; Safarian, S.; Michel, H.: Inward-facing conformation of a multidrug resistance MATE family transporter. Proceedings of the National Academy of Sciences of the United States of America 116 (25), S. 12275 - 12284 (2019)
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Langebeck-Jensen, K.; Shahar, O. D.; Schuman, E. M.; Langer, J. D.; Soojin, R.: Larval Zebrafish Proteome Regulation in Response to an Environmental Challenge. Proteomics 19 (14), 1900028 (2019)
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Yilmaz, I.; Yildiz, Ö.; Korkmaz, F.: Structural properties of an engineered outer membrane protein G mutant, OmpG-16SL, investigated with infrared spectroscopy. Journal of Biomolecular Structure and Dynamics 37 (2019)
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Huang, G.; Wagner, T.; Wodrich, M. D.; Ataka, K.; Bill, E.; Ermler, U.; Hu, X.; Shima, S.: The atomic-resolution crystal structure of activated [Fe]-hydrogenase. Nature Catalysis 2 (6), S. 537 - 543 (2019)
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Singh, S.; Akhter, M. S.; Dodt, J.; Volkers, P.; Reuter, A.; Reinhart, C.; Krettler, C.; Oldenburg, J.; Biswas, A.: Identification of Potential Novel Interacting Partners for Coagulation Factor XIII B (FXIII-B) Subunit, a Protein Associated with a Rare Bleeding Disorder. International Journal of Molecular Sciences 20 (11), 2682 (2019)
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Bhaskara, R.; Grumati, P.; Garcia-Pardo, J.; Kalayil, S.; Covarrubias-Pinto, A.; Chen, W.; Kudryashev, M.; Đikić, I.; Hummer, G.: Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy. Nature Communications 10, 2370 (2019)
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Holzer, K.; Ori, A.; Cooke, A.; Dauch, D.; Drucker, E.; Riemenschneider, P.; Andres-Pons, A.; DiGuilio, A. L.; Mackmull, M.-T.; Baßler, J. et al.; Roessler, S.; Breuhahn, K.; Zender, L.; Glavy, J. S.; Dombrowski, F.; Hurt, E.; Schirmacher, P.; Beck, M.; Singer, S.: Nucleoporin Nup155 is part of the p53 network in liver cancer. Nature Communications 10, 2147 (2019)
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Köfinger, J.; Stelzl, L. S.; Reuter, K.; Allande, C.; Reichel, K.; Hummer, G.: Efficient Ensemble Refinement by Reweighting. Journal of Chemical Theory and Computation 15 (5), S. 3390 - 3409 (2019)
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von Bülow, S.; Siggel, M.; Linke, M.; Hummer, G.: Dynamic cluster formation determines viscosity and diffusion in dense protein solutions. Proceedings of the National Academy of Sciences of the United States of America 116 (20), S. 9843 - 9852 (2019)
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Willistein, M.; Bechtel, D. F.; Müller, C. S.; Demmer, U.; Heimann, L.; Kayastha, K.; Schünemann, V.; Pierik, A. J.; Ullmann, G. M.; Ermler, U. et al.; Boll, M.: Low potential enzymatic hydride transfer via highly cooperative and inversely functionalized flavin cofactorsLow potential enzymatic hydride transfer via highly cooperative and inversely functionalized flavin cofactors. Nature Communications 10, 2074 (2019)
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Chang, Y.-N.; Jaumann, E. A.; Reichel, K.; Hartmann, J.; Oliver, D.; Hummer, G.: Structural basis for functional interactions in dimers of SLC26 transporters. Nature Communications 10, 2032 (2019)
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Hampoelz, B.; Andres-Pons, A.; Kastritis, P.; Beck, M.: Structure and Assembly of the Nuclear Pore Complex. Annual Review of Biophysics 48, S. 515 - 536 (2019)
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van Lin, S. R.; Grotz, K. K.; Siretanu, I.; Schwierz, N.; Mugele, F.: Ion-Specific and pH-Dependent Hydration of Mica-Electrolyte Interfaces. Langmuir 35 (17), S. 5737 - 5745 (2019)
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Akram, M.; Dietl, A.; Mersdorf, U.; Prinz, S.; Maalcke, W. J.; Keltjens, J. T.; Ferousi, C.; de Almeida, N. M.; Reimann, J.; Kartal, B. et al.; Jetten, M. S. M.; Parey, K.; Barends, T.: A 192-heme electron transfer network in the hydrazine dehydrogenase complex. Science Advances 5 (4), eaav4310 (2019)
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Okazaki, K.-i.; Wöhlert, D.; Warnau, J.; Jung, H.; Yildiz, Ö.; Kühlbrandt, W.; Hummer, G.: Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature Communications 10, 1742 (2019)
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Kovalev, K.; Polovinkin, V.; Gushchin, I.; Alekseev, A.; Shevchenko, V.; Borshchevskiy, V.; Astashkin, R.; Balandin, T.; Bratanov, D.; Vaganova, S. et al.; Popov, A.; Chupin, V.; Büldt, G.; Bamberg, E.; Gordeliy, V.: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Science Advances 5, eaav2671 (2019)
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Perez, C.; Mehdipour, A. R.; Hummer, G.; Locher, K. P.: Structure of Outward-Facing PglK and Molecular Dynamics of Lipid-Linked Oligosaccharide Recognition and Translocation. Structure 27 (4), S. 669 - 678.e5 (2019)
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D'Imprima, E.; Floris, D.; Joppe, M.; Sánchez, R.; Grinninger, M.; Kühlbrandt, W.: Protein denaturation at the air-water interface and how to prevent it. eLife 8, e42747 (2019)
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Kaur, J.; Kriebel, C. N.; Eberhardt, P.; Jakdetchai, O.; Leeder, A. J.; Weber, I.; Brown, L. J.; Brown, R. C.D.; Becker-Baldus, J.; Bamann, C. et al.; Wachtveitl, J.; Glaubitz, C.: Solid-state NMR analysis of the sodium pump Krokinobacter rhodopsin 2 and its H30A mutant. Journal of Structural Biology 206 (1), S. 55 - 65 (2019)
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Palacio-Rodríguez, K.; Lans, I.; Cavasotto, C. N.; Cossio, P.: Exponential consensus ranking improves the outcome in docking and receptor ensemble docking. Scientific Reports 9, 5142, S. 1 - 14 (2019)
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von Domaros, M.; Bratko, D.; Kirchner, B.; Hummer, G.; Luzar, A.: Multifaceted Water Dynamics in Spherical Nanocages. The Journal of Physical Chemistry C 123 (10), S. 5989 - 5998 (2019)
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Watanabe, T.; Wagner, T.; Huang, G.; Kahnt, J.; Ataka, K.; Ermler, U.; Shima, S.: The Bacterial [Fe]‐Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates. Angewandte Chemie International Edition in English 58 (11), S. 3506 - 3510 (2019)
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Reich, S.; Kaiser, P.; Mafi, M.; Schmalz, H.; Rhinow, D.; Freitag, R.; Greiner, A.: High-Temperature Spray-Dried Polymer/Bacteria Microparticles for Electrospinning of Composite Nonwovens. Macromolecular Bioscience 19 (3), 1800356 (2019)
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Blum, T.; Hahn, A.; Meier, T.; Davies, K. M.; Kühlbrandt, W.: Dimers of mitochondrial ATP synthase induce membrane curvature and self-assemble into rows. Proceedings of the National Academy of Sciences of the United States of America 116 (10), S. 4250 - 4255 (2019)
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Leone, V.; Waclawska, I.; Kossmann, K.; Koshy, C.; Sharma, M.; Prisner, T. F.; Ziegler, C.; Endeward, B.; Forrest, L. R.: Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP. Journal of General Physiology 151 (3), S. 381 - 394 (2019)
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Reuter, K.; Köfinger, J.: CADISHI: Fast parallel calculation of particle-pair distance histograms on CPUs and GPUs. Computer Physics Communications 236, S. 274 - 284 (2019)
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Alvarez-Castelao, B.; Schanzenbächer, C. T.; Langer, J. D.; Schuman, E. M.: Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo. Nature Protocols 14 (2), S. 556 - 575 (2019)
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Liu, X.; Zhao, X.; Na, R.; Li, L.; Warkentin, E.; Witt, J.; Lu, X.; Yu, Y.; Wei, Y.; Peng, G. et al.; Li, Y.; Wang, J.: The structure differences of Japanese encephalitis virus SA14 and SA14-14-2 E proteins elucidate the virulence attenuation mechanism. Protein and Cell 10 (2), S. 149 - 153 (2019)
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Richter, M.; Moroniak, S. J.; Michel, H.: Identification of competitive inhibitors of the human taurine transporter TauT in a human kidney cell line. Pharmacological Reports 71 (1), S. 121 - 127 (2019)
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Chang, C.; Young, L. N.; Morris, K. L.; Bülow, S. v.; Schöneberg, J.; Yamamoto-Imoto, H.; Oe, Y.; Yamamoto, K.; Nakamura, S.; Stjepanovic, G. et al.; Hummer, G.; Yoshimori, T.; Hurley, J. H.: Bidirectional Control of Autophagy by BECN1 BARA Domain Dynamics. Molecular Cell 73 (2), S. 339 - 353 (2019)
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Xie, H.; Valsamidis, G.; Mathioudaki, E.; Tsiotis, G.: Complete Genome Sequence of Pseudomonas sp. Strain phDV1, an Isolate Capable of Efficient Degradation of Aromatic Hydrocarbons. Microbiology Resource Announcement 8 (2), e01171-18 (2019)
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Patiño-Ruiz, M.; Dwivedi, M.; Călinescu, O.; Karabel, M.; Padan, E.; Fendler, K.: Replacement of Lys-300 with a glutamine in the NhaA Na+/H+ antiporter of Escherichia coli yields a functional electrogenic transporter. The Journal of Biological Chemistry 294 (1), S. 246 - 256 (2019)
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Böger, C.; Baldering, T. N.; Krüger, C. L.; Harwardt, M.-L. I. E.; Mertinkus, K. R.; Schröder, M. S.; Karathanasis, C.; Deußner-Helfmann, N. S.; Barth, H.-D.; Malkusch, S. et al.; Dietz, M. S.; Hummer, G.; Wohland, T.; Heilemann, M.: Quantification of membrane receptor complexes with single-molecule localization microscopy. Proceedings of SPIE 10884, 108840T (2019)
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Kühlbrandt, W.: Structure and Mechanisms of F-Type ATP Synthases. Annual Review of Biochemistry 88, S. 515 - 549 (2019)
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Sousa, J. S.; Vonck, J.: Respiratory supercomplexes III2IV2 come into focus. Nature Structural and Molecular Biology 26 (2), S. 87 - 89 (2019)
2018
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Schöneberg, J.; Pavlin, M. R.; Yan, S.; Righini, M.; Lee, I.-H.; Carlson, L.-A.; Bahrami, A. H.; Goldman, D. H.; Ren, X.; Hummer, G. et al.; Bustamante, C.; Hurley, J. H.: ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. Science 362 (6421), S. 1423 - 1428 (2018)
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Poppe, J.; Brünle, S.; Hail, R.; Wiesemann, K.; Schneider, K.; Ermler, U.: The Molybdenum Storage Protein: A soluble ATP hydrolysis‐dependent molybdate pump. The FEBS Journal 285 (24), S. 4602 - 4616 (2018)
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Grotz, K. K.; Nueesch, M. F.; Holmstrom, E. D.; Heinz, M.; Stelzl, L. S.; Schuler, B.; Hummer, G.: Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments. The Journal of Physical Chemistry B 122 (49), S. 11626 - 11639 (2018)
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Brünle, S.; Poppe, J.; Hail, R.; Demmer, U.; Ermler, U.: The molybdenum storage protein - A bionanolab for creating experimentally alterable polyoxomolybdate clusters. Journal of Inorganic Biochemistry 189 (12), S. 172 - 179 (2018)
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Liu, W.; Liu, A.; Gao, H.; Wang, Q.; Wang, L.; Warkentin, E.; Rao, Z.; Michel, H.; Peng, G.: Structural properties of the peroxiredoxin AhpC2 from the hyperthermophilic eubacterium Aquifex aeolicus. Biochimica et Biophysica Acta (BBA) - General Subjects 1862 (12), S. 2797 - 2805 (2018)
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Seyfried, P.; Heinz, M.; Pintér, G.; Klötzner, D.-P.; Becker, Y.; Bolte, M.; Jonker, H. R. A.; Stelzl, L. S.; Hummer, G.; Schwalbe, H. et al.; Heckel, A.: Optimal Destabilization of DNA Double Strands by Single-Nucleobase Caging. Chemistry – A European Journal 24 (66), S. 17568 - 17576 (2018)
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Wagner , T.; Huang, G.; Ermler, U.; Shima, S.: How [Fe]-Hydrogenase from Methanothermobacter is Protected Against Light and Oxidative Stress. Angewandte Chemie International Edition in English 57 (46), S. 15056 - 15059 (2018)
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Bock, C.; Löhr, F.; Tumulka, F.; Reichel, K.; Würz, J.; Hummer, G.; Schäfer, L.; Tampé, R.; Joseph, B.; Bernhard, F. et al.; Dötsch, V.; Abele, R.: Structural and functional insights into the interaction and targeting hub TMD0 of the polypeptide transporter TAPL. Scientific Reports 8, 15662 (2018)
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Rossini, E.; Gajewski, J.; Klaus, M.; Hummer, G.; Grininger, M.: Analysis and engineering of substrate shuttling by the acyl carrier protein (ACP) in fatty acid synthases (FASs). Chemical Communications 54 (82), S. 11606 - 11609 (2018)
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Reiter, S.; Hülsdunk, P.; Woo, T.; Eberle, J. S.; Akay, L. A.; Longo, A.; Meier-Credo, J.; Kretschmer, F.; Langer, J. D.; Kaschube, M. et al.; Laurent, G.: Elucidating the control and development of skin patterning in cuttlefish. Nature 562 (7727), S. 361 - 366 (2018)
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Reichel, K.; Stelzl, L. S.; Köfinger, J.; Hummer, G.: Precision DEER Distances from Spin-Label Ensemble Refinement. The Journal of Physical Chemistry Letters 9 (18), S. 5748 - 5752 (2018)
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Parey, K.; Brandt, U.; Xie, H.; Mills, D. J.; Siegmund, K.; Vonck, J.; Kühlbrandt, W.; Zickermann, V.: Cryo-EM structure of respiratory complex I at work. eLife 7, e39213 (2018)
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Cossio, P.; Allegretti, M.; Mayer, F.; Müller, V.; Vonck, J.; Hummer, G.: Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase. Microscopy 67 (5), S. 266 - 273 (2018)
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Lans, I.; Seco, J.; Serrano, A.; Burbano, R.; Cossio, P.; Daza, M. C.; Medina, M.: The Dimer-of-Trimers Assembly Prevents Catalysis at the Transferase Site of Prokaryotic FAD Synthase. Biophysical Journal 115 (6), S. 988 - 995 (2018)
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Warnau, J.; Sharma, V.; Gamiz-Hernandez, A. P.; Di Luca, A.; Haapanen, O.; Vattulainen, I.; Wilkström, M.; Hummer, G.; Kaila, V. R. I.: Redox-coupled quinone dynamics in the respiratory complex I. Proceedings of the National Academy of Sciences of the United States of America 115 (36), S. E8413 - E8420 (2018)
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Hofbauer, H. F.; Gecht, M.; Fischer, S. C.; Seybert, A.; Frangakis, A. S.; Stelzer, E. H. K.; Covino, R.; Hummer, G.; Ernst, R.: The molecular recognition of phosphatidic acid by an amphipathic helix in Opi1. The Journal of Cell Biology: JCB 217 (9), S. 3109 - 3126 (2018)
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Birch, J.; Axford, D.; Foadi, J.; Meyer, A.; Eckhardt, A.; Thielmann, Y.; Moraes, I.: The fine art of integral membrane protein crystallization. Methods 147, S. 150 - 162 (2018)
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Vögele, M.; Köfinger, J.; Hummer, G.: Molecular dynamics simulations of carbon nanotube porins in lipid bilayers. Faraday Discussions 209, S. 341 - 358 (2018)
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Cruz-León, S.; Vázquez-Mayagoitia, A.; Melchionna, S.; Schwierz, N.; Fyta, M.: Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations. The Journal of Physical Chemistry B 122 (32), S. 7915 - 7928 (2018)
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Gränz, M.; Erlenbach, N.; Spindler, P.; Gophane, D. B.; Stelzl, L. S.; Sigurdsson, S. T.; Prisner, T. F.: Dynamics of Nucleic Acids at Room Temperature Revealed by Pulsed EPR Spectroscopy. Angewandte Chemie International Edition 57 (33), S. 10540 - 10543 (2018)
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Covino, R.; Hummer, G.; Ernst, R.: Integrated Functions of Membrane Property Sensors and a Hidden Side of the Unfolded Protein Response. Molecular Cell 71 (3), S. 458 - 467 (2018)
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