Publications of the Max Planck Institute of Biophysics
Institute Publications Ernst Bamberg Martin Beck Ulrich Ermler Gerhard Hummer Misha Kudryashev Werner Kühlbrandt Julian Langer Hartmut Michel Bonnie Murphy Nadine Schwierz Sonja Welsch Search YearbooksPublications Julian Langer
Journal Article (77)
2024
Journal Article
15, 7518 (2024)
Interdomain-linkers control conformational transitions in the SLC23 elevator transporter UraA. Nature Communications
Journal Article
15, 4783 (2024)
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature Communications
Journal Article
31, pp. 683 - 698.e7 (2024)
A dual-targeting succinate dehydrogenase and F1Fo-ATP synthase inhibitor rapidly sterilizes replicating and non-replicating Mycobacterium tuberculosis. Cell Chemical Biology
Journal Article
19 (2), pp. 563 - 574 (2024)
Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. ACS Chemical Biology
Journal Article
15 (1), 205 (2024)
VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticity. Nature Communications 2023
Journal Article
186 (24), pp. 5411 - 5427.e23 (2023)
The proteomic landscape of synaptic diversity across brain regions and cell types. Cell
Journal Article
95, pp. 11892 - 11900 (2023)
Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics. Analytical Chemistry
Journal Article
23 (10), 2200138 (2023)
Insights into the sulfur metabolism of Chlorobaculum tepidum by label-free quantitative proteomics. Proteomics
Journal Article
380 (6647), eadf2018 (2023)
An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science
Journal Article
1864 (2), 148953 (2023)
Isolation of a novel heterodimeric PSII complex via strep-tagged PsbO. Biochimica et Biophysica Acta, Bioenergetics
Journal Article
30 (3), pp. 321 - 329 (2023)
Essential protein P116 extracts cholesterol and other indispensable lipids for Mycoplasmas. Nature Structural and Molecular Biology 2022
Journal Article
8 (47), eadc9952 (2022)
Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum. Science Advances
Journal Article
20, pp. 5430 - 5439 (2022)
Ligand binding and conformational dynamics of the E. coli nicotinamide nucleotide transhydrogenase revealed by hydrogen/deuterium exchange mass spectrometry. Computational and Structural Biotechnology Journal
Journal Article
33 (7), pp. 1293 - 1302 (2022)
Top-Down Identification and Sequence Analysis of Small Membrane Proteins Using MALDI-MS/MS. Journal of the American Society for Mass Spectrometry
Journal Article
3 (1), 101063 (2022)
Quantifying phosphorylation dynamics in primary neuronal cultures using LC-MS/MS. STAR Protocols
Journal Article
13, 1224 (2022)
Co-translational assembly orchestrates competing biogenesis pathways. Nature Communications
Journal Article
5 (1), 166 (2022)
An amiloride derivative is active against the F1Fo-ATP synthase and cytochrome bd oxidase of Mycobacterium tuberculosis. Communications Biology
Journal Article
204 (1), e0035321 (2022)
A Practical Guide to Small Protein Discovery and Characterization using Mass Spectrometry. Journal of Bacteriology 2021
Journal Article
24 (12), e103524 (2021)
Closantel is an allosteric inhibitor of human Taspase1. iScience
Journal Article
12 (1), 6127 (2021)
Neuronal ribosomes exhibit dynamic and context-dependent exchange of ribosomal proteins. Nature Communications
Journal Article
36 (8), 109583 (2021)
Dynamic bi-directional phosphorylation events associated with the reciprocal regulation of synapses during homeostatic up- and down-scaling. Cell Reports
Journal Article
7, pp. 524 - 538 (2021)
Structural insights into photosystem II assembly. Nature Plants
Journal Article
20, 100016 (2021)
Proteome Turnover in the Spotlight: Approaches, Applications, and Perspectives. Molecular and Cellular Proteomics
Journal Article
21 (2), e2000003 (2021)
Proteomic Characterization of the Pseudomonas sp. Strain phDV1 Response to Monocyclic Aromatic Compounds. Proteomics 2020
Journal Article
11 (1), 5569 (2020)
Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. Nature Communications
Journal Article
11, 2231 (2020)
Cryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium. Nature Communications
Journal Article
142 (16), pp. 7647 - 7654 (2020)
Site-Specific Detection of Arginine Methylation in Highly Repetitive Protein Motifs of Low Sequence Complexity by NMR. Journal of the American Chemical Society
Journal Article
9, e52939 (2020)
Proteome dynamics during homeostatic scaling in cultured neurons. eLife
Journal Article
367 (6477), eaay4991, p. 526 (2020)
Monosomes actively translate synaptic mRNAs in neuronal processes. Science 2019
Journal Article
52 (116), pp. 26497 - 26504 (2019)
Molybdate pumping into the molybdenum storage protein via an ATP-powered piercing mechanism. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
10, 5009 (2019)
Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus. Nature Communications
Journal Article
366 (6461), pp. 100 - 104 (2019)
Active site rearrangement and structural divergence in prokaryotic respiratory oxidases. Science
Journal Article
19 (19), 1800332 (2019)
Proteome Analysis of Enriched Heterocysts from Two Hydrogenase Mutants from Anabaena sp. PCC 7120. Proteomics
Journal Article
364 (6446), eaaw9128, p. 1155 (2019)
Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling. Science
Journal Article
19 (14), 1900028 (2019)
Larval Zebrafish Proteome Regulation in Response to an Environmental Challenge. Proteomics
Journal Article
14 (2), pp. 556 - 575 (2019)
Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo. Nature Protocols 2018
Journal Article
562 (7727), pp. 361 - 366 (2018)
Elucidating the control and development of skin patterning in cuttlefish. Nature
Journal Article
7, e34202 (2018)
Local and global influences on protein turnover in neurons and glia. eLife
Journal Article
9, 1728 (2018)
Structural basis for energy transduction by respiratory alternative complex III. Nature Communications
Journal Article
430 (9), pp. 1311 - 1323 (2018)
The Xenobiotic Extrusion Mechanism of the MATE Transporter NorM_PS from Pseudomonas stutzeri. Journal of Molecular Biology (London)
Journal Article
78 (8), pp. 1935 - 1947 (2018)
Tumorigenic and Antiproliferative Properties of the TALE-Transcription Factors MEIS2D and MEIS2A in Neuroblastoma. Cancer research: an official organ of the American Association for Cancer Research
Journal Article
7, e33322 (2018)
Time- and polarity-dependent proteomic changes associated with homeostatic scaling at central synapses. eLife 2017
Journal Article
35 (12), pp. 1196 - 1201 (2017)
Cell-type-specific metabolic labeling of nascent proteomes in vivo. Nature Biotechnology
Journal Article
114 (44), pp. 11691 - 11696 (2017)
Ligand-induced conformational dynamics of the Escherichia coli Na+/H+ antiporter NhaA revealed by hydrogen/deuterium exchange mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
170 (4), pp. 693 - 700 (2017)
Cryo-EM Structure of the TOM Core Complex from Neurospora crassa. Cell
Journal Article
216 (9), pp. 2715 - 2729 (2017)
MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1. The Journal of Cell Biology: JCB
Journal Article
1858 (3), pp. 231 - 238 (2017)
Subunit CcoQ is involved in the assembly of the Cbb3-type cytochrome c oxidases from Pseudomonas stutzeri ZoBell but not required for their activity. Biochimica et Biophysica Acta, Bioenergetics 2016
Journal Article
590 (24), pp. 4472 - 4479 (2016)
Ligand binding and conformational dynamics in a flavin-based electron-bifurcating enzyme complex revealed by Hydrogen-Deuterium Exchange Mass Spectrometry. FEBS Letters
Journal Article
92 (2), pp. 358 - 371 (2016)
Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses. Neuron
Journal Article
5, e20609 (2016)
Unconventional secretory processing diversifies neuronal ion channel properties. eLife
Journal Article
1858 (9), pp. 2140 - 2144 (2016)
Molecular characterization of methanogenic N5-methyltetrahydromethanopterin: Coenzyme M methyltransferase. Biochimica et Biophysica Acta-Biomembranes
Journal Article
352 (6285), pp. 583 - 586 (2016)
Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases. Science
Journal Article
283 (3), pp. 510 - 520 (2016)
Stoichiometry and deletion analyses of subunits in the heterotrimeric F-ATP synthase c ring from the acetogenic bacterium Acetobacterium woodii. The FEBS Journal
Journal Article
7 (7), pp. 1 - 9 (2016)
Identification and characterization of the novel subunit CcoM in the cbb3-cytochrome c oxidase from Pseudomonas stutzeri ZoBell. mBio
Journal Article
6 (1), pp. 90 - 102 (2016)
Cell-free synthesis of isotopically labelled peptide ligands for the functional characterization of G protein-coupled receptors. FEBS Open Bio 2015
Journal Article
5, e18375 (2015)
Identification of potential mitochondrial CLPXP protease interactors and substrates suggests its central role in energy metabolism. Scientific Reports
Journal Article
195 (11), pp. 5421 - 5431 (2015)
Inhibition of Histone Deacetylases Permits Lipopolysaccharide-Mediated Secretion of Bioactive IL-1β via a Caspase-1–Independent Mechanism. Journal of Immunology
Journal Article
197 (9), pp. 1681 - 1689 (2015)
Heterotrimeric NADH-Oxidizing Methylenetetrahydrofolate Reductase from the Acetogenic Bacterium Acetobacterium woodii. Journal of Bacteriology (Washington, DC)
Journal Article
290 (11), pp. 6994 - 7002 (2015)
Na+ Transport by the A1AO-ATP Synthase Purified from Thermococcus onnurineus and Reconstituted into Liposomes. The Journal of Biological Chemistry
Journal Article
1 (4), pp. 1 - 8 (2015)
Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline. Science Advances 2014
Journal Article
160 (6), pp. 1278 - 1289 (2014)
Three multihaem cytochromes c from the hyperthermophilic archaeon Ignicoccus hospitalis: purification, properties and localization. Microbiology/SGM
Journal Article
92 (5), pp. 973 - 984 (2014)
The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle. Molecular Microbiology
Journal Article
196 (2), pp. 472 - 482 (2014)
Biochemical and Biophysical Characterization of the Two Isoforms of cbb3-Type Cytochrome c Oxidase from Pseudomonas stutzeri. Journal of Bacteriology (Washington, DC)
Journal Article
1840 (1), pp. 34 - 40 (2014)
Production of fully assembled and active Aquifex aeolicus F1FO ATP synthase in Escherichia coli. Biochimica et Biophysica Acta (BBA) - General Subjects 2013
Journal Article
280 (14), pp. 3425 - 3435 (2013)
Role of the N-terminal signal peptide in the membrane insertion of Aquifex aeolicus F1F0 ATP synthase c-subunit. The FEBS Journal 2012
Journal Article
1824 (12), pp. 1358 - 1365 (2012)
Isolation, functional characterization and crystallization of Aq_1259, an outer membrane protein with porin features, from Aquifex aeolicus. Biochimica et Biophysica Acta-Proteins and Proteomics
Journal Article
287 (47), pp. 39327 - 39337 (2012)
A c Subunit with Four Transmembrane Helices and One Ion (Na+)-binding Site in an Archaeal ATP Synthase. The Journal of Biological Chemistry
Journal Article
109 (25), pp. E1599 - E1608 (2012)
Engineering rotor ring stoichiometries in the ATP synthase. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
287 (11), pp. 8484 - 8494 (2012)
Unusual N-terminal ααβαββα Fold of PilQ from Thermus thermophilus Mediates Ring Formation and Is Essential for Piliation. The Journal of Biological Chemistry
Journal Article
194 (2), pp. 75 - 85 (2012)
Genetic analysis of MA4079, an aldehyde dehydrogenase homolog, in Methanosarcina acetivorans. Archives of Microbiology 2011
Journal Article
286 (41), pp. 35634 - 35642 (2011)
Several ADP-ribosylation Factor (Arf) Isoforms Support COPI Vesicle Formation. The Journal of Biological Chemistry 2010
Journal Article
6, pp. 891 - 899 (2010)
Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases. Nature Chemical Biology
Journal Article
1798 (11), pp. 2114 - 2123 (2010)
Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase. Biochimica et Biophysica Acta-Biomembranes
Journal Article
329 (5989), pp. 327 - 330 (2010)
The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping. Science
Journal Article
1797, pp. 763 - 772 (2010)
Structural and energetic basis for H+ versus Na+ binding selectivity in ATP synthase Fo rotors. Biochimica et Biophysica Acta: BBA 2008
Journal Article
9 (4), pp. 597 - 607 (2008)
A Conformational Change in the α‐subunit of Coatomer Induced by Ligand Binding to γ‐COP Revealed by Single‐pair FRET. Traffic 2007
Journal Article
581 (11), pp. 2083 - 2088 (2007)
Conformational changes of coat proteins during vesicle formation. FEBS Letters Book Chapter (1)
2023
Book Chapter
2603, pp. 1 - 18 (Ed. Luque-Garcia, J. L.). Springer, New York, NY (2023)
Dynamic SILAC to Determine Protein Turnover in Neurons and Glia. In: SILAC: Methods and Protocols, Vol. Proceedings (2)
2018
Proceedings
Structural basis for energy transduction by respiratory alternative complex III (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). 20th European Bioenergetics Conference, Budapest, August 25, 2018 - August 30, 2018. (2018)
Proceedings
Cryo-EM structure of the alternative complex III from Rhodothermus marinus (Biochim. Biophys. Acta (BBA) - Bioenergetics, 1859). (2018), 1 p.