Publications of the Max Planck Institute of Biophysics
Institute Publications Ernst Bamberg Martin Beck Ulrich Ermler Gerhard Hummer Misha Kudryashev Werner Kühlbrandt Julian Langer Hartmut Michel Bonnie Murphy Nadine Schwierz Sonja Welsch Search YearbooksPublications Nadine Schwierz
Journal Article (34)
2023
Journal Article
39 (44), pp. 15553 - 15562 (2023)
Adsorbing DNA to Mica by Cations: Influence of Valency and Ion Type. Langmuir
Journal Article
15 (27), pp. 11647 - 11656 (2023)
Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity. Nanoscale 2022
Journal Article
RNA Captures More Cations than DNA: Insights from Molecular Dynamics Simulations. The Journal of Physical Chemistry B (2022)
Journal Article
50 (10), pp. 5726 - 5739 (2022)
Twisting DNA by salt. Nucleic Acids Research (London)
Journal Article
9, 826505 (2022)
Combining Coarse-Grained Simulations and Single Molecule Analysis Reveals a Three-State Folding Model of the Guanidine-II Riboswitch. Frontiers in Molecular Biosciences
Journal Article
156 (11), 114501 (2022)
Magnesium force fields for OPC water with accurate solvation, ion-binding, and water-exchange properties: Successful transfer from SPC/E. The Journal of Chemical Physics
Journal Article
18 (2), pp. 1202 - 1212 (2022)
Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA. Journal of Chemical Theory and Computation
Journal Article
18 (1), pp. 526 - 537 (2022)
Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D. Journal of Chemical Theory and Computation
Journal Article
13 (1), 85 (2022)
Cryo-EM demonstrates the in vitro proliferation of an ex vivo amyloid fibril morphology by seeding. Nature Communications 2021
Journal Article
155 (8), 084503 (2021)
Kinetic pathways of water exchange in the first hydration shell of magnesium: Influence of water model and ionic force field. The Journal of Chemical Physics
Journal Article
154 (17), 171102 (2021)
Extended magnesium and calcium force field parameters for accurate ion–nucleic acid interactions in biomolecular simulations. The Journal of Chemical Physics
Journal Article
17 (4), pp. 2530 - 2540 (2021)
Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties. Journal of Chemical Theory and Computation 2020
Journal Article
152 (22), 224106 (2020)
Kinetic pathways of water exchange in the first hydration shell of magnesium. The Journal of Chemical Physics
Journal Article
36 (21), pp. 5979 - 5989 (2020)
Hofmeister Series for Metal-Cation-RNA Interactions: The Interplay of Binding Affinity and Exchange Kinetics. Langmuir 2019
Journal Article
35 (17), pp. 5737 - 5745 (2019)
Ion-Specific and pH-Dependent Hydration of Mica-Electrolyte Interfaces. Langmuir 2018
Journal Article
122 (32), pp. 7915 - 7928 (2018)
Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations. The Journal of Physical Chemistry B
Journal Article
148 (7), 074504 (2018)
Force fields for monovalent and divalent metal cations in TIP3P water based on thermodynamic and kinetic properties. The Journal of Chemical Physics 2017
Journal Article
121 (4), pp. 671 - 682 (2017)
From Aβ Filament to Fibril: Molecular Mechanism of Surface-Activated Secondary Nucleation from All-Atom MD Simulations. The Journal of Physical Chemistry B 2016
Journal Article
120 (47), pp. 12088 - 12097 (2016)
Mechanism of Nucleation and Growth of Aβ40 Fibrils from All-Atom and Coarse-Grained Simulations. The Journal of Physical Chemistry B
Journal Article
120 (27), pp. 14513 - 14521 (2016)
Hydrogen and Electric Power Generation from Liquid Microjets: Design Principles for Optimizing Conversion Efficiency. The Journal of Physical Chemistry C
Journal Article
23, pp. 10 - 18 (2016)
Reversed Hofmeister series—The rule rather than the exception. Current Opinion in Colloid & Interface Science
Journal Article
138 (2), pp. 527 - 539 (2016)
Dynamics of Seeded Aβ40-Fibril Growth from Atomistic Molecular Dynamics Simulations: Kinetic Trapping and Reduced Water Mobility in the Locking Step. Journal of the American Chemical Society
Journal Article
32 (3), pp. 810 - 821 (2016)
Mechanism of Reversible Peptide-Bilayer Attachment: Combined Simulation and Experimental Single-Molecule Study. Langmuir 2015
Journal Article
31 (1), pp. 215 - 225 (2015)
Specific ion binding to carboxylic surface groups and the pH dependence of the Hofmeister series. Langmuir 2013
Journal Article
222 (11), pp. 2973 - 2993 (2013)
Effects of boundaries on structure formation in low-dimensional colloid model systems near the liquid-solid-transition in equilibrium and in external fields and under shear. The European Physical Journal Special Topics
Journal Article
29 (8), pp. 2602 - 2614 (2013)
Anionic and cationic Hofmeister effects on hydrophobic and hydrophilic surfaces. Langmuir 2012
Journal Article
2, 1015 (2012)
Non-monotonic crossover from single-file to regular diffusion in micro-channels. Scientific Reports
Journal Article
134 (48), pp. 19628 - 19638 (2012)
On the relationship between peptide adsorption resistance and surface contact angle: a combined experimental and simulation single-molecule study. Journal of the American Chemical Society
Journal Article
24 (46), 464119 (2012)
Effects of confinement and external fields on structure and transport in colloidal dispersions in reduced dimensionality. Journal of Physics: Condensed Matter
Journal Article
13 (4), pp. 982 - 989 (2012)
The effect of temperature on single-polypeptide adsorption. ChemPhysChem
Journal Article
28 (8), pp. 3881 - 3886 (2012)
Effective interaction between two ion-adsorbing plates: Hofmeister series and salting-in/salting-out phase diagrams from a global mean-field analysis. Langmuir 2011
Journal Article
84 (6 Pt 1), 061903 (2011)
Attractive double-layer forces between neutral hydrophobic and neutral hydrophilic surfaces. Physical Review E 2010
Journal Article
82 (3 Pt 1), 031401 (2010)
Colloidal systems in three-dimensional microchannels: lattice control via channel width and external force. Physical Review E
Journal Article
26 (10), pp. 7370 - 7379 (2010)
Reversed anionic Hofmeister series: the interplay of surface charge and surface polarity. Langmuir Book Chapter (1)
2010
Book Chapter
Ion-Specificity: From Solvation Thermodynamics to Molecular Simulations and Back. In: Specific Ion Effects, pp. 231 - 266 (Ed. Kunz, W.). World Scientific Publishing, New Jersey (2010)