
Publications of the Max Planck Institute of Biophysics
Institute Publications Ernst Bamberg Martin Beck Ulrich Ermler Gerhard Hummer Misha Kudryashev Werner Kühlbrandt Julian Langer Hartmut Michel Bonnie Murphy Nadine Schwierz Sonja Welsch Search YearbooksPublications Nadine Schwierz
Journal Article (34)
2023
Journal Article
Adsorbing DNA to Mica by Cations: Influence of Valency and Ion Type. Langmuir 39 (44), pp. 15553 - 15562 (2023)
Journal Article
Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity. Nanoscale 15 (27), pp. 11647 - 11656 (2023)
2022
Journal Article
RNA Captures More Cations than DNA: Insights from Molecular Dynamics Simulations. The Journal of Physical Chemistry B (2022)
Journal Article
Twisting DNA by salt. Nucleic Acids Research (London) 50 (10), pp. 5726 - 5739 (2022)
Journal Article
Combining Coarse-Grained Simulations and Single Molecule Analysis Reveals a Three-State Folding Model of the Guanidine-II Riboswitch. Frontiers in Molecular Biosciences 9, 826505 (2022)
Journal Article
Magnesium force fields for OPC water with accurate solvation, ion-binding, and water-exchange properties: Successful transfer from SPC/E. The Journal of Chemical Physics 156 (11), 114501 (2022)
Journal Article
Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA. Journal of Chemical Theory and Computation 18 (2), pp. 1202 - 1212 (2022)
Journal Article
Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D. Journal of Chemical Theory and Computation 18 (1), pp. 526 - 537 (2022)
Journal Article
Cryo-EM demonstrates the in vitro proliferation of an ex vivo amyloid fibril morphology by seeding. Nature Communications 13 (1), 85 (2022)
2021
Journal Article
Kinetic pathways of water exchange in the first hydration shell of magnesium: Influence of water model and ionic force field. The Journal of Chemical Physics 155 (8), 084503 (2021)
Journal Article
Extended magnesium and calcium force field parameters for accurate ion–nucleic acid interactions in biomolecular simulations. The Journal of Chemical Physics 154 (17), 171102 (2021)
Journal Article
Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties. Journal of Chemical Theory and Computation 17 (4), pp. 2530 - 2540 (2021)
2020
Journal Article
Kinetic pathways of water exchange in the first hydration shell of magnesium. The Journal of Chemical Physics 152 (22), 224106 (2020)
Journal Article
Hofmeister Series for Metal-Cation-RNA Interactions: The Interplay of Binding Affinity and Exchange Kinetics. Langmuir 36 (21), pp. 5979 - 5989 (2020)
2019
Journal Article
Ion-Specific and pH-Dependent Hydration of Mica-Electrolyte Interfaces. Langmuir 35 (17), pp. 5737 - 5745 (2019)
2018
Journal Article
Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations. The Journal of Physical Chemistry B 122 (32), pp. 7915 - 7928 (2018)
Journal Article
Force fields for monovalent and divalent metal cations in TIP3P water based on thermodynamic and kinetic properties. The Journal of Chemical Physics 148 (7), 074504 (2018)
2017
Journal Article
From Aβ Filament to Fibril: Molecular Mechanism of Surface-Activated Secondary Nucleation from All-Atom MD Simulations. The Journal of Physical Chemistry B 121 (4), pp. 671 - 682 (2017)
2016
Journal Article
Mechanism of Nucleation and Growth of Aβ40 Fibrils from All-Atom and Coarse-Grained Simulations. The Journal of Physical Chemistry B 120 (47), pp. 12088 - 12097 (2016)
Journal Article
Hydrogen and Electric Power Generation from Liquid Microjets: Design Principles for Optimizing Conversion Efficiency. The Journal of Physical Chemistry C 120 (27), pp. 14513 - 14521 (2016)
Journal Article
Reversed Hofmeister series—The rule rather than the exception. Current Opinion in Colloid & Interface Science 23, pp. 10 - 18 (2016)
Journal Article
Dynamics of Seeded Aβ40-Fibril Growth from Atomistic Molecular Dynamics Simulations: Kinetic Trapping and Reduced Water Mobility in the Locking Step. Journal of the American Chemical Society 138 (2), pp. 527 - 539 (2016)
Journal Article
Mechanism of Reversible Peptide-Bilayer Attachment: Combined Simulation and Experimental Single-Molecule Study. Langmuir 32 (3), pp. 810 - 821 (2016)
2015
Journal Article
Specific ion binding to carboxylic surface groups and the pH dependence of the Hofmeister series. Langmuir 31 (1), pp. 215 - 225 (2015)
2013
Journal Article
Effects of boundaries on structure formation in low-dimensional colloid model systems near the liquid-solid-transition in equilibrium and in external fields and under shear. The European Physical Journal Special Topics 222 (11), pp. 2973 - 2993 (2013)
Journal Article
Anionic and cationic Hofmeister effects on hydrophobic and hydrophilic surfaces. Langmuir 29 (8), pp. 2602 - 2614 (2013)
2012
Journal Article
Non-monotonic crossover from single-file to regular diffusion in micro-channels. Scientific Reports 2, 1015 (2012)
Journal Article
On the relationship between peptide adsorption resistance and surface contact angle: a combined experimental and simulation single-molecule study. Journal of the American Chemical Society 134 (48), pp. 19628 - 19638 (2012)
Journal Article
Effects of confinement and external fields on structure and transport in colloidal dispersions in reduced dimensionality. Journal of Physics: Condensed Matter 24 (46), 464119 (2012)
Journal Article
The effect of temperature on single-polypeptide adsorption. ChemPhysChem 13 (4), pp. 982 - 989 (2012)
Journal Article
Effective interaction between two ion-adsorbing plates: Hofmeister series and salting-in/salting-out phase diagrams from a global mean-field analysis. Langmuir 28 (8), pp. 3881 - 3886 (2012)
2011
Journal Article
Attractive double-layer forces between neutral hydrophobic and neutral hydrophilic surfaces. Physical Review E 84 (6 Pt 1), 061903 (2011)
2010
Journal Article
Colloidal systems in three-dimensional microchannels: lattice control via channel width and external force. Physical Review E 82 (3 Pt 1), 031401 (2010)
Journal Article
Reversed anionic Hofmeister series: the interplay of surface charge and surface polarity. Langmuir 26 (10), pp. 7370 - 7379 (2010)
Book Chapter (1)
2010
Book Chapter
Ion-Specificity: From Solvation Thermodynamics to Molecular Simulations and Back. In: Specific Ion Effects, pp. 231 - 266 (Ed. Kunz, W.). World Scientific Publishing, New Jersey (2010)