
Publications of the Max Planck Institute of Biophysics
Institute Publications Ernst Bamberg Martin Beck Ulrich Ermler Gerhard Hummer Misha Kudryashev Werner Kühlbrandt Julian Langer Hartmut Michel Bonnie Murphy Nadine Schwierz Sonja Welsch Search YearbooksPublications Martin Beck
Journal Article (101)
1.
Journal Article
Visualizing the disordered nuclear transport machinery in situ. Nature (2023)
2.
Journal Article
20 (2), pp. 284 - 294 (2023)
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature Methods 3.
Journal Article
11, e83299 (2022)
Glycolytic flux-signaling controls mouse embryo mesoderm development. eLife 4.
Journal Article
13, 7431 (2022)
Protein-Peptide Turnover Profiling reveals the order of PTM addition and removal during protein maturation. Nature Communications 5.
Journal Article
13, 7435 (2022)
Structures of the eukaryotic ribosome and its translational states in situ. Nature Communications 6.
Journal Article
8 (35), eabq5206 (2022)
Operation of a TCA cycle subnetwork in the mammalian nucleus. Science Advances 7.
Journal Article
376 (6598), eabm9506 (2022)
AI-based structure prediction empowers integrative structural analysis of human nuclear pores. Science 8.
Journal Article
5 (6), e202201397 (2022)
Conserved exchange of paralog proteins during neuronal differentiation. Life science alliance 9.
Journal Article
13, 1224 (2022)
Co-translational assembly orchestrates competing biogenesis pathways. Nature Communications 10.
Journal Article
10, e70506 (2021)
A modular platform for automated cryo-FIB workflows. eLife 11.
Journal Article
374 (6573), eabd9776 (2021)
Nuclear pores dilate and constrict in cellulo. Science 12.
Journal Article
374 (6568), pp. 717 - 723 (2021)
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution. Science 13.
Journal Article
597 (7877), pp. 533 - 538 (2021)
Bioaccumulation of therapeutic drugs by human gut bacteria. Nature 14.
Journal Article
32 (17), pp. 1523 - 1533 (2021)
Three-dimensional superresolution fluorescence microscopy maps the variable molecular architecture of the nuclear pore complex. Molecular Biology of the Cell 15.
Journal Article
16 (7), e0254429 (2021)
Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum. PLoS One 16.
Journal Article
184 (4), pp. 1032 - 1046 (2021)
Cone-shaped HIV-1 capsids are transported through intact nuclear pores. Cell 17.
Journal Article
28 (1), pp. 2 - 7 (2021)
Structural biology in the fight against COVID-19. Nature Structural and Molecular Biology 18.
Journal Article
586 (7831), pp. 796 - 800 (2020)
In-cell architecture of the nuclear pore and snapshots of its turnover. Nature 19.
Journal Article
370 (6513), pp. 203 - 208 (2020)
In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges. Science 20.
Journal Article
117 (36), pp. 22157 - 22166 (2020)
Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proceedings of the National Academy of Sciences of the United States of America 21.
Journal Article
15 (9), pp. 2956 - 2979 (2020)
Spatially resolved analysis of FFPE tissue proteomes by quantitative mass spectrometry. Nature Protocols 22.
Journal Article
27 (8), pp. 743 - 751 (2020)
Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism. Nature Structural and Molecular Biology 23.
Journal Article
11, 876 (2020)
Benchmarking tomographic acquisition schemes for high-resolution structural biology. Nature Communications 24.
Journal Article
92 (5), pp. 4016 - 4022 (2020)
Proteome-Wide Structural Probing of Low-Abundant Protein Interactions by Cross-Linking Mass Spectrometry. Analytical Chemistry 25.
Journal Article
22 (2), pp. 159 - 166 (2020)
Selective autophagy degrades nuclear pore complexes. Nature Cell Biology 26.
Journal Article
21, pp. 664 - 680 (2019)
Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. iScience 27.
Journal Article
179 (3), pp. 671 - 686.e17 (2019)
Nuclear Pores Assemble from Nucleoporin Condensates During Oogenesis. Cell 28.
Journal Article
29 (10), pp. 791 - 803 (2019)
The Benefits of Cotranslational Assembly: A Structural Perspective. Trends in Cell Biology 29.
Journal Article
177 (5), pp. 1308 - 1318 (2019)
Disentangling Genetic and Environmental Effects on the Proteotypes of Individuals. Cell 30.
Journal Article
10, 2147 (2019)
Nucleoporin Nup155 is part of the p53 network in liver cancer. Nature Communications 31.
Journal Article
48, pp. 515 - 536 (2019)
Structure and Assembly of the Nuclear Pore Complex. Annual Review of Biophysics 32.
Journal Article
8, e45284 (2019)
An ESCRT-LEM Protein Surveillance System Is Poised to Directly Monitor the Nuclear Envelope and Nuclear Transport System. eLife 33.
Journal Article
52, pp. 32 - 40 (2018)
From the resolution revolution to evolution: structural insights into the evolutionary relationships between vesicle coats and the nuclear pore. Current Opinion in Structural Biology 34.
Journal Article
8, 11249 (2018)
Nuclear Pore Complex Components in the Malaria Parasite Plasmodium Berghei. Scientific Reports 35.
Journal Article
14 (7), e8131 (2018)
Quantifying compartment-associated variations of protein abundance in proteomics data. Molecular Systems Biology 36.
Journal Article
9 (1), 2361 (2018)
In situ architecture of the algal nuclear pore complex. Nature Communications 37.
Journal Article
173 (6), pp. 1495 - 1507 (2018)
Pervasive Protein Thermal Stability Variation During the Cell Cycle. Cell 38.
Journal Article
17 (4), pp. 810 - 825 (2018)
Spatial Tissue Proteomics Quantifies Inter- And Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC). Molecular and Cellular Proteomics 39.
Journal Article
9, 689 (2018)
Systematic analysis of protein turnover in primary cells. Nature Communications 40.
Journal Article
25 (1), pp. 21 - 28 (2018)
Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings. Nature Structural and Molecular Biology 41.
Journal Article
114 (52), pp. 13726 - 13731 (2017)
Proteasomes tether to two distinct sites at the nuclear pore complex. Proceedings of the National Academy of Sciences of the United States of America 42.
Journal Article
13 (12), 962 (2017)
Landscape of nuclear transport receptor cargo specificity. Molecular Systems Biology 43.
Journal Article
67 (5), pp. 1051 - 1061 (2017)
Alterations of the nuclear transport system in hepatocellular carcinoma - New basis for therapeutic strategies. Journal of Hepatology 44.
Journal Article
8, 1107 (2017)
A Short Linear Motif in Scaffold Nup145C Connects Y-complex With Pre-Assembled Outer Ring Nup82 Complex. Nature Communications 45.
Journal Article
36 (18), pp. 2698 - 2709 (2017)
Structural Insights Into Transcription Initiation by Yeast RNA Polymerase I. The EMBO Journal 46.
Journal Article
13 (7), 936 (2017)
Capturing protein communities by structural proteomics in a thermophilic eukaryote. Molecular Systems Biology 47.
Journal Article
18 (2), pp. 73 - 89 (2017)
The nuclear pore complex: understanding its function through structural insight. Nature Reviews Molecular Cell Biology 48.
Journal Article
18 (2), pp. 264 - 279 (2017)
Architecture of the yeast Elongator complex. EMBO Journal 49.
Journal Article
215 (4), pp. 543 - 558 (2016)
The Endosomal Transcriptional Regulator RNF11 Integrates Degradation and Transport of EGFR. The Journal of Cell Biology: JCB 50.
Journal Article
7, 13248 (2016)
Structure of the ribosome post-recycling complex probed by chemical cross-linking and mass spectrometry. Nature Communications 51.
Journal Article
26 (11), pp. 825 - 837 (2016)
Cryo-Electron Tomography: Can It Reveal the Molecular Sociology of Cells in Atomic Detail? Trends in Cell Biology 52.
Journal Article
5, e19071 (2016)
Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope. eLife 53.
Journal Article
166 (3), pp. 664 - 678 (2016)
Pre-assembled Nuclear Pores Insert Into the Nuclear Envelope During Early Development. Cell 54.
Journal Article
23 (7), pp. 624 - 630 (2016)
Toward the atomic structure of the nuclear pore complex: when top down meets bottom up. Nature Structural and Molecular Biology 55.
Journal Article
13 (6), pp. 515 - 520 (2016)
Automated structure modeling of large protein assemblies using crosslinks as distance restraints. Nature methods 56.
Journal Article
428 (10 Pt A), pp. 2001 - 2010 (2016)
Structure Determination of the Nuclear Pore Complex With Three-Dimensional Cryo Electron Microscopy. Journal of Molecular Biology (London) 57.
Journal Article
352 (6283), pp. 363 - 365 (2016)
Molecular architecture of the inner ring scaffold of the human nuclear pore complex. Science 58.
Journal Article
17, 47 (2016)
Spatiotemporal variation of mammalian protein complex stoichiometries. Genome Biology 59.
Journal Article
11 (1), e0146457 (2016)
The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight Into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex. PLoS One 60.
Journal Article
61 (1), pp. 125 - 137 (2016)
Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains. Molecular Cell 61.
Journal Article
7 (11), pp. 1465 - 1479 (2015)
Characterization and quantification of proteins secreted by single human embryos prior to implantation. Embo Molecular Medicine 62.
Journal Article
526 (7571), pp. 140 - 143 (2015)
In situ structural analysis of the human nuclear pore complex. Nature 63.
Journal Article
1 (3), pp. 224 - 237 (2015)
Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. Cell Systems 64.
Journal Article
43 (15), pp. 7600 - 7611 (2015)
A Network of SMG-8, SMG-9 and SMG-1 C-terminal Insertion Domain Regulates UPF1 Substrate Recruitment and Phosphorylation. Nucleic Acids Research (London) 65.
Journal Article
349 (6244), pp. 195 - 198 (2015)
VESICULAR TRANSPORT. A Structure of the COPI Coat and the Role of Coat Proteins in Membrane Vesicle Assembly. Science 66.
Journal Article
6, 7387 (2015)
Architecture of TFIIIC and Its Role in RNA Polymerase III Pre-Initiation Complex Assembly. Nature Communications 67.
Journal Article
34, pp. 31 - 38 (2015)
Towards understanding nuclear pore complex architecture and dynamics in the age of integrative structural analysis. Current Opinion in Cell Biology 68.
Journal Article
14 (5), pp. 1350 - 1360 (2015)
Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs). Molecular and Cellular Proteomics 69.
Journal Article
6, 6510 (2015)
Symportin 1 Chaperones 5S RNP Assembly During Ribosome Biogenesis by Occupying an Essential rRNA-binding Site. Nature Communications 70.
Journal Article
189 (3), pp. 177 - 183 (2015)
Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures. Journal of Structural Biology 71.
Journal Article
208 (3), pp. 283 - 297 (2015)
Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold. The Journal of Cell Biology: JCB 72.
Journal Article
42 (22), pp. 13525 - 13533 (2014)
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum. Nucleic Acids Research (London) 73.
Journal Article
74 (20), pp. 5758 - 5771 (2014)
Cellular Disposal of miR23b by RAB27-dependent Exosome Release Is Linked to Acquisition of Metastatic Properties. Cancer research: an official organ of the American Association for Cancer Research 74.
Journal Article
60 (3), pp. 884 - 895 (2014)
Prosurvival function of the cellular apoptosis susceptibility/importin-α1 transport cycle is repressed by p53 in liver cancer. Hepatology 75.
Journal Article
21 (6), pp. 560 - 568 (2014)
Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits. Nature Structural and Molecular Biology 76.
Journal Article
5 (2), pp. 119 - 123 (2014)
Toward understanding the structure of the vertebrate nuclear pore complex. The Nucleus 77.
Journal Article
155 (6), pp. 1233 - 1243 (2013)
Integrated structural analysis of the human nuclear pore complex scaffold. Cell 78.
Journal Article
21 (9), pp. 1672 - 1682 (2013)
Protein interfaces of the conserved Nup84 complex from Chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy. Structure 79.
Journal Article
183 (3), pp. 363 - 367 (2013)
Fourier ring correlation as a resolution criterion for super-resolution microscopy. Journal of Structural Biology 80.
Journal Article
14 (2), pp. 178 - 183 (2013)
Facilitated aggregation of FG nucleoporins under molecular crowding conditions. EMBO Reports 81.
Journal Article
9, 648 (2013)
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines. Molecular Systems Biology 82.
Journal Article
337 (6100), pp. 1348 - 1352 (2012)
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science 83.
Journal Article
9 (9), pp. 901 - 903 (2012)
False discovery rate estimation for cross-linked peptides identified by mass spectrometry. Nature Methods 84.
Journal Article
178 (2), pp. 152 - 164 (2012)
High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching. Journal of Structural Biology 85.
Journal Article
7, 549 (2011)
The quantitative proteome of a human cell line. Molecular Systems Biology 86.
Journal Article
7, 510 (2011)
Absolute quantification of microbial proteomes at different states by directed mass spectrometry. Molecular Systems Biology 87.
Journal Article
8 (5), pp. 430 - 435 (2011)
mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nature Methods 88.
Journal Article
173 (3), pp. 483 - 496 (2011)
Exploring the spatial and temporal organization of a cell's proteome. Journal of Structural Biology 89.
Journal Article
22 (1), pp. 3 - 8 (2011)
Comprehensive proteomics. Current Opinion in Biotechnology 90.
Journal Article
27 (13), pp. i69 - i76 (2011)
Template-free detection of macromolecular complexes in cryo electron tomograms. Bioinformatics 91.
Journal Article
107 (49), pp. 20992 - 20997 (2010)
Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution. Proceedings of the National Academy of Sciences of the United States of America 92.
Journal Article
9 (8), pp. 1634 - 1649 (2010)
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Molecular and Cellular Proteomics 93.
Journal Article
6 (11), pp. 817 - 823 (2009)
Visual proteomics of the human pathogen Leptospira interrogans. Nature Methods 94.
Journal Article
284 (34), pp. 22952 - 22960 (2009)
Architecture and molecular mechanism of PAN, the archaeal proteasome regulatory ATPase. The Journal of Biological Chemistry 95.
Journal Article
460 (11), pp. 762 - 765 (2009)
Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. Nature 96.
Journal Article
5 (4), pp. 315 - 318 (2008)
Identification of cross-linked peptides from large sequence databases. Nature Methods 97.
Journal Article
23 (8), pp. 1025 - 1033 (2008)
Structural and functional insights into nucleocytoplasmic transport. Histology and Histopathology 98.
Journal Article
449 (7162), pp. 611 - 615 (2007)
Snapshots of nuclear pore complexes in action captured by cryo-electron tomography. Nature 99.
Journal Article
17, pp. 79 - 84 (2007)
Organization of actin networks in intact filopodia. Current Biology