Max Planck Institute of Biophysics

Publications of the Max Planck Institute of Biophysics 1947 – present

Journal Article (72)

2019

Journal Article

Brünle, S.; Eisinger, M. L.; Poppe, J.; Mills, D. J.; Langer, J. D.; Vonck, J.; Ermler, U.: Molybdate pumping into the molybdenum storage protein via an ATP-powered piercing mechanism. Proceedings of the National Academy of Sciences of the United States of America 52 (116), pp. 26497 - 26504 (2019)

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Journal Article

Parey, K.; Haapanen, O.; Sharma, V.; Köfeler, H.; Züllig, T.; Prinz, S.; Siegmund, K.; Wittig, I.; Mills, D.; Vonck, J. et al.; Kühlbrandt, W.; Zickermann, V.: High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease. Science Advances 5 (12), p. eaax9484 (2019)

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Journal Article

Berman, H. M.; Adams, P. D.; Bonvin, A. A.; Burley, S. K.; Carragher, B.; Chiu, W.; DiMaio, F.; Ferrin, T. E.; Gabanyi, M. J.; Goddard, T. D. et al.; Griffin, P. R.; Haas, J.; Hanke, C. A.; Hoch, J. C.; Hummer, G.; Kurisu, G.; Lawson, C. L.; Leitner, A.; Markley, J. L.; Meiler, J.; Montelione, G. T.; Phillips, G. N.; Prisner, T.; Rappsilber, J.; Schriemer, D. C.; Schwede, T.; Seidel, C. A. M.; Strutzenberg, T. S.; Svergun, D. I.; Tajkhorshid, E.; Trewhella, J.; Vallat, B.; Velankar, S.; Vuister, G. W.; Webb, B.; Westbrook, J. D.; White, K. L.; Sali, A.: Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure 27 (12), pp. 1745 - 1759 (2019)

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Journal Article

Mikušević, V.; Schrecker, M.; Kolesova, N.; Patiño-Ruiz, M.; Fendler, K.; Hänelt, I.: A channel profile report of the unusual K⁺ channel KtrB. Journal of General Physiology 151 (12), pp. 1357 - 1368 (2019)

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Journal Article

Baldering, T. N.; Bullerjahn, J. T.; Hummer, G.; Heilemann, M.; Malkusch, S.: Molecule counts in complex oligomers with single-molecule localization microscopy. Journal of Physics D: Applied Physics 52 (47), 474002 (2019)

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Journal Article

Ehrenberg, D.; Krause, N.; Saita, M.; Bamann, C.; Kar, R. K.; Hoffmann, K.; Heinrich, D.; Schapiro, I.; Heberle, J.; Schlesinger, R.: Atomistic Insight into the Role of Threonine 127 in the Functional Mechanism of Channelrhodopsin-2. Applied Sciences 9 (22), 4905 (2019)

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Journal Article

Pohl, C.; Đikić, I.: Cellular quality control by the ubiquitin-proteasome system and autophagy. Science 366 (6467), pp. 818 - 822 (2019)

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Journal Article

Herhaus, L.; Bhaskara, R.; Lystad, A. H.; Gestal-Mato, U.; Covarrubias-Pinto, A.; Bonn, F.; Simonsen, A.; Hummer, G.; Đikić, I.: TBK1-mediated phosphorylation of LC3C and GABARAP-L2 controls autophagosome shedding by ATG4 protease. EMBO Reports 21 (1), e48317 (2019)

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Journal Article

Lencina, A. M.; Koepke, J.; Preu, J.; Münke, C.; Gennis, R. B.; Michel, H.; Schurig-Briccio, L. A.: Characterization and X-ray structure of the NADH-dependent coenzyme A disulfide reductase from Thermus thermophilus. Biochimica et Biophysica Acta, Bioenergetics 1860 (11), e148080 (2019)

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Journal Article

Pfeil-Gardiner, O.; Mills, D. J.; Vonck, J.; Kuehlbrandt, W.: A comparative study of single-particle cryo-EM with liquid-nitrogen and liquid-helium cooling. IUCrJ 6, pp. 1099 - 1105 (2019)

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Journal Article

Wang, X.; You, X.; Langer, J. D.; Hou, J.; Rupprecht, F.; Vlatkovic, I.; Quedenau, C.; Tushev, G.; Epstein, I.; Schaefke, B. et al.; Sun , W.; Fang, L.; Li, G.; Hu , Y.; Schuman, E. M.; Chen, W.: Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus. Nature Communications 10, 5009 (2019)

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Journal Article

Bratanov, D.; Kovalev, K.; Machtens, J.-P.; Astashkin, R.; Chizhov, I.; Soloviov, D.; Volkov, D.; Polovinkin, V.; Zabelskii, D.; Mager, T. et al.; Gushchin, I.; Rokitskaya, T.; Antonenko, Y.; Alekseev, A.; Shevchenko, V.; Yutin, N.; Rosselli, R.; Baeken, C.; Borshchevskiy, V.; Bourenkov, G.; Popov, A.; Balandin, T.; Büldt, G.; Manstein, D. J.; Rodriguez-Valera, F.; Fahlke, C.; Bamberg, E.; Koonin, E.; Gordeliy, V.: Unique structure and function of viral rhodopsins. Nature Communications 10, 4939 (2019)

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Journal Article

Patiño-Ruiz, M.; Fendler, K.; Călinescu, O.: Mutation of two key aspartate residues alters stoichiometry of the NhaB Na⁺/H⁺ exchanger from Klebsiella pneumoniae. Scientific Reports 9, 15390 (2019)

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Journal Article

Kim, G.; Shin, D.; Lee, S.; Yun, J.; Lee, S.: Crystal Structure of IlvC, a Ketol-Acid Reductoisomerase, from Streptococcus Pneumoniae. Crystals 9 (11), 551 (2019)

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Journal Article

Hampoelz, B.; Schwarz, A.; Ronchi, P.; Bragulat-Teixidor, H.; Tischer, C.; Gaspar, I.; Ephrussi, A.; Schwab, Y.; Beck, M.: Nuclear Pores Assemble from Nucleoporin Condensates During Oogenesis. Cell 179 (3), pp. 671 - 686.e17 (2019)

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Journal Article

Siggel, M.; Bhaskara, R. M.; Hummer, G.: Phospholipid Scramblases Remodel the Shape of Asymmetric Membranes. The Journal of Physical Chemistry Letters 10 (20), pp. 6351 - 6354 (2019)

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Journal Article

Ruesink, H.; Reimer, L.; Gregersen, E.; Möller, A.; Betzer, C.; Jensen, P. H.: Stabilization of α-synuclein oligomers using formaldehyde. PLoS One 14 (10), e0216764 (2019)

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Journal Article

Safarian, S.; Hahn, A.; Mills, D.; Radloff, M.; Eisinger, M. L.; Nikolaev, A.; Meier-Credo, J.; Melin, F.; Miyoshi, H.; Gennis, R.B. et al.; Sakamoto, J.; Langer, J. D.; Hellwig, P.; Kühlbrandt, W.; Michel, H.: Active site rearrangement and structural divergence in prokaryotic respiratory oxidases. Science 366 (6461), pp. 100 - 104 (2019)

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Journal Article

Covino, R.; Woodside, M. T.; Hummer, G.; Szabo, A.; Cossio, P.: Molecular free energy profiles from force spectroscopy experiments by inversion of observed committors. The Journal of Chemical Physics 151 (15), 154115 (2019)

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Journal Article

Schwarz, A.; Beck, M.: The Benefits of Cotranslational Assembly: A Structural Perspective. Trends in Cell Biology 29 (10), pp. 791 - 803 (2019)

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Journal Article

Degl'Innocenti, A.; Meloni, G.; Mazzolai, B.; Ciofani, G.: A purely bioinformatic pipeline for the prediction of mammalian odorant receptor gene enhancers. BMC Bioinformatics 20 (1), 474 (2019)

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Journal Article

Bhattacharjee, A. S.; Konakamchi, S.; Turaev, D.; Vincis, R.; Nunes, D.; Dingankar, A. A.; Spors, H.; Carleton, A.; Kuner, T.; Abraham, N. M.: Similarity and Strength of Glomerular Odor Representations Define a Neural Metric of Sniff-Invariant Discrimination Time. Cell Reports 28 (11), pp. 2966 - 2978 (2019)

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Journal Article

Linker, S. M.; Magarkar, A.; Köfinger, J.; Hummer, G.; Seeliger, D.: Fragment Binding Pose Predictions Using Unbiased Simulations and Markov-State Models. Journal of Chemical Theory and Computation 15 (9), pp. 4974 - 4981 (2019)

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Journal Article

Nishimura, T.; Gecht, M.; Covino, R.; Hummer, G.; Surma, M. A.; Klose, C.; Arai, H.; Kono, N.; Stefan, C. J.: Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P₂ Synthesis. Molecular Cell 75 (5), pp. 1043 - 1057 (2019)

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Journal Article

Ochoa, R.; Laio, A.; Cossio, P.: Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations. Journal of Chemical Information and Modeling 59 (8), pp. 3464 - 3473 (2019)

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Journal Article

Kourpa, K.; Manarolaki, E.; Lyratzakis, A.; Strataki, V.; Rupprecht, F. A.; Langer, J. D.; Tsiotis, G.: Proteome Analysis of Enriched Heterocysts from Two Hydrogenase Mutants from Anabaena sp. PCC 7120. Proteomics 19 (19), 1800332 (2019)

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Journal Article

Bhogaraju, S.; Bonn, F.; Mukherjee, R.; Adams, M.; Pfleiderer, M. M.; Galej, W. P.; Matkovic, V.; Lopez-Mosqueda, J.; Kalayil, S.; Shin, D. et al.; Đikić, I.: Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation. Nature 572 (7769), pp. 382 - 386 (2019)

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Journal Article

Henderson, R. K.; Fendler, K.; Poolman, B.: Coupling efficiency of secondary active transporters. Current Opinion in Biotechnology 58, pp. 62 - 71 (2019)

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Journal Article

Bahrami, A.; Bahrami, A. H.: Vesicle constriction by rings of Janus nanoparticles and aggregates of curved proteins. Nanotechnology 30 (34), 345101 (2019)

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Journal Article

Hofmann, S.; Januliene, D.; Mehdipour, A. R.; Thomas, C.; Stefan, E.; Brüchert, S.; Kuhn, B. T.; Geertsma, E. R.; Hummer, G.; Tampé, R. et al.; Möller, A.: Conformation space of a heterodimeric ABC exporter under turnover conditions. Nature 571 (7766), pp. 580 - 583 (2019)

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Journal Article

Faelber, K.; Dietrich, L.; Noel, J. K.; Wollweber, F.; Pfitzner, A.-K.; Mühleip, A.; Sánchez, R.; Kudryashev, M.; Chiaruttini, N.; Lilie, H. et al.; Schlegel, J.; Rosenbaum, E.; Hessenberger, M.; Matthaeus, C.; Kunz, S.; von der Malsburg, A.; Noè, F.; Roux, A.; van der Laan, M.; Kühlbrandt, W.; Daumke, O.: Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1. Nature 571 (7765), pp. 429 - 433 (2019)

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Journal Article

Timcenko, M.; Lyons, J. A.; Januliene, D.; Ulstrup, J. J.; Dieudonné, T.; Montigny, C.; Ash, M.-R.; Karlsen, J. L.; Boesen, T.; Kühlbrandt, W. et al.; Lenoir, G.; Möller, A.; Nissen, P.: Structure and autoregulation of a P4-ATPase lipid flippase. Nature 571 (7765), pp. 366 - 370 (2019)

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Journal Article

Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Membrane perforation by the pore-forming toxin pneumolysin. Proceedings of the National Academy of Sciences of the United States of America 116 (27), pp. 13352 - 13357 (2019)

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Journal Article

Bausewein, T.; Nussberger, S.; Kühlbrandt, W.: Cryo-EM structure of Neurospora crassa respiratory complex IV. IUCrJ 6 (4), pp. 773 - 780 (2019)

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Journal Article

Scherr, J.; Neuhaus, A.; Parey, K.; Klusch, N.; Murphy, B. J.; Zickermann, V.; Kühlbrandt, W.; Terfort, A.; Rhinow, D.: Noncovalent Functionalization of Carbon Substrates with Hydrogels Improves Structural Analysis of Vitrified Proteins by Electron Cryo-Microscopy. ACS Nano 13 (6), pp. 7185 - 7190 (2019)

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Journal Article

Murphy, B. J.; Klusch, N.; Langer, J. D.; Mills, D.; Yildiz, Ö.; Kühlbrandt, W.: Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F₁-F_o coupling. Science 364 (6446), eaaw9128, p. 1155 (2019)

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Journal Article

Vögele, M.; Köfinger, J.; Hummer, G.: Finite-Size-Corrected Rotational Diffusion Coefficients of Membrane Proteins and Carbon Nanotubes from Molecular Dynamics Simulations. The Journal of Physical Chemistry B 123 (24), pp. 5099 - 5106 (2019)

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Journal Article

Zakrzewska, S.; Mehdipour, A. R.; Malviya, V. N.; Nonaka, T.; Koepke, J.; Muenke, C.; Hausner, W.; Hummer, G.; Safarian, S.; Michel, H.: Inward-facing conformation of a multidrug resistance MATE family transporter. Proceedings of the National Academy of Sciences of the United States of America 116 (25), pp. 12275 - 12284 (2019)

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Journal Article

Langebeck-Jensen, K.; Shahar, O. D.; Schuman, E. M.; Langer, J. D.; Soojin, R.: Larval Zebrafish Proteome Regulation in Response to an Environmental Challenge. Proteomics 19 (14), 1900028 (2019)

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Journal Article

Yilmaz, I.; Yildiz, Ö.; Korkmaz, F.: Structural properties of an engineered outer membrane protein G mutant, OmpG-16SL, investigated with infrared spectroscopy. Journal of Biomolecular Structure and Dynamics 37 (2019)

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Journal Article

Huang, G.; Wagner, T.; Wodrich, M. D.; Ataka, K.; Bill, E.; Ermler, U.; Hu, X.; Shima, S.: The atomic-resolution crystal structure of activated [Fe]-hydrogenase. Nature Catalysis 2 (6), pp. 537 - 543 (2019)

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Journal Article

Singh, S.; Akhter, M. S.; Dodt, J.; Volkers, P.; Reuter, A.; Reinhart, C.; Krettler, C.; Oldenburg, J.; Biswas, A.: Identification of Potential Novel Interacting Partners for Coagulation Factor XIII B (FXIII-B) Subunit, a Protein Associated with a Rare Bleeding Disorder. International Journal of Molecular Sciences 20 (11), 2682 (2019)

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Journal Article

Bhaskara, R.; Grumati, P.; Garcia-Pardo, J.; Kalayil, S.; Covarrubias-Pinto, A.; Chen, W.; Kudryashev, M.; Đikić, I.; Hummer, G.: Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy. Nature Communications 10, 2370 (2019)

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Journal Article

Holzer, K.; Ori, A.; Cooke, A.; Dauch, D.; Drucker, E.; Riemenschneider, P.; Andres-Pons, A.; DiGuilio, A. L.; Mackmull, M.-T.; Baßler, J. et al.; Roessler, S.; Breuhahn, K.; Zender, L.; Glavy, J. S.; Dombrowski, F.; Hurt, E.; Schirmacher, P.; Beck, M.; Singer, S.: Nucleoporin Nup155 is part of the p53 network in liver cancer. Nature Communications 10, 2147 (2019)

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Journal Article

Köfinger, J.; Stelzl, L. S.; Reuter, K.; Allande, C.; Reichel, K.; Hummer, G.: Efficient Ensemble Refinement by Reweighting. Journal of Chemical Theory and Computation 15 (5), pp. 3390 - 3409 (2019)

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Journal Article

von Bülow, S.; Siggel, M.; Linke, M.; Hummer, G.: Dynamic cluster formation determines viscosity and diffusion in dense protein solutions. Proceedings of the National Academy of Sciences of the United States of America 116 (20), pp. 9843 - 9852 (2019)

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Journal Article

Willistein, M.; Bechtel, D. F.; Müller, C. S.; Demmer, U.; Heimann, L.; Kayastha, K.; Schünemann, V.; Pierik, A. J.; Ullmann, G. M.; Ermler, U. et al.; Boll, M.: Low potential enzymatic hydride transfer via highly cooperative and inversely functionalized flavin cofactorsLow potential enzymatic hydride transfer via highly cooperative and inversely functionalized flavin cofactors. Nature Communications 10, 2074 (2019)

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Journal Article

Chang, Y.-N.; Jaumann, E. A.; Reichel, K.; Hartmann, J.; Oliver, D.; Hummer, G.: Structural basis for functional interactions in dimers of SLC26 transporters. Nature Communications 10, 2032 (2019)

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Journal Article

Hampoelz, B.; Andres-Pons, A.; Kastritis, P.; Beck, M.: Structure and Assembly of the Nuclear Pore Complex. Annual Review of Biophysics 48, pp. 515 - 536 (2019)

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Journal Article

van Lin, S. R.; Grotz, K. K.; Siretanu, I.; Schwierz, N.; Mugele, F.: Ion-Specific and pH-Dependent Hydration of Mica-Electrolyte Interfaces. Langmuir 35 (17), pp. 5737 - 5745 (2019)

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Journal Article

Akram, M.; Dietl, A.; Mersdorf, U.; Prinz, S.; Maalcke, W. J.; Keltjens, J. T.; Ferousi, C.; de Almeida, N. M.; Reimann, J.; Kartal, B. et al.; Jetten, M. S. M.; Parey, K.; Barends, T.: A 192-heme electron transfer network in the hydrazine dehydrogenase complex. Science Advances 5 (4), eaav4310 (2019)

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Journal Article

Okazaki, K.-i.; Wöhlert, D.; Warnau, J.; Jung, H.; Yildiz, Ö.; Kühlbrandt, W.; Hummer, G.: Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature Communications 10, 1742 (2019)

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Journal Article

Kovalev, K.; Polovinkin, V.; Gushchin, I.; Alekseev, A.; Shevchenko, V.; Borshchevskiy, V.; Astashkin, R.; Balandin, T.; Bratanov, D.; Vaganova, S. et al.; Popov, A.; Chupin, V.; Büldt, G.; Bamberg, E.; Gordeliy, V.: Structure and mechanisms of sodium-pumping KR2 rhodopsin. Science Advances 5, eaav2671 (2019)

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Journal Article

Perez, C.; Mehdipour, A. R.; Hummer, G.; Locher, K. P.: Structure of Outward-Facing PglK and Molecular Dynamics of Lipid-Linked Oligosaccharide Recognition and Translocation. Structure 27 (4), pp. 669 - 678.e5 (2019)

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Journal Article

D'Imprima, E.; Floris, D.; Joppe, M.; Sánchez, R.; Grinninger, M.; Kühlbrandt, W.: Protein denaturation at the air-water interface and how to prevent it. eLife 8, e42747 (2019)

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Journal Article

Kaur, J.; Kriebel, C. N.; Eberhardt, P.; Jakdetchai, O.; Leeder, A. J.; Weber, I.; Brown, L. J.; Brown, R. C.D.; Becker-Baldus, J.; Bamann, C. et al.; Wachtveitl, J.; Glaubitz, C.: Solid-state NMR analysis of the sodium pump Krokinobacter rhodopsin 2 and its H30A mutant. Journal of Structural Biology 206 (1), pp. 55 - 65 (2019)

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Journal Article

Palacio-Rodríguez, K.; Lans, I.; Cavasotto, C. N.; Cossio, P.: Exponential consensus ranking improves the outcome in docking and receptor ensemble docking. Scientific Reports 9, 5142, pp. 1 - 14 (2019)

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Journal Article

von Domaros, M.; Bratko, D.; Kirchner, B.; Hummer, G.; Luzar, A.: Multifaceted Water Dynamics in Spherical Nanocages. The Journal of Physical Chemistry C 123 (10), pp. 5989 - 5998 (2019)

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Journal Article

Watanabe, T.; Wagner, T.; Huang, G.; Kahnt, J.; Ataka, K.; Ermler, U.; Shima, S.: The Bacterial [Fe]‐Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates. Angewandte Chemie International Edition in English 58 (11), pp. 3506 - 3510 (2019)

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Journal Article

Reich, S.; Kaiser, P.; Mafi, M.; Schmalz, H.; Rhinow, D.; Freitag, R.; Greiner, A.: High-Temperature Spray-Dried Polymer/Bacteria Microparticles for Electrospinning of Composite Nonwovens. Macromolecular Bioscience 19 (3), 1800356 (2019)

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Journal Article

Blum, T.; Hahn, A.; Meier, T.; Davies, K. M.; Kühlbrandt, W.: Dimers of mitochondrial ATP synthase induce membrane curvature and self-assemble into rows. Proceedings of the National Academy of Sciences of the United States of America 116 (10), pp. 4250 - 4255 (2019)

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Journal Article

Leone, V.; Waclawska, I.; Kossmann, K.; Koshy, C.; Sharma, M.; Prisner, T. F.; Ziegler, C.; Endeward, B.; Forrest, L. R.: Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP. Journal of General Physiology 151 (3), pp. 381 - 394 (2019)

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Journal Article

Reuter, K.; Köfinger, J.: CADISHI: Fast parallel calculation of particle-pair distance histograms on CPUs and GPUs. Computer Physics Communications 236, pp. 274 - 284 (2019)

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Journal Article

Alvarez-Castelao, B.; Schanzenbächer, C. T.; Langer, J. D.; Schuman, E. M.: Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo. Nature Protocols 14 (2), pp. 556 - 575 (2019)

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Journal Article

Liu, X.; Zhao, X.; Na, R.; Li, L.; Warkentin, E.; Witt, J.; Lu, X.; Yu, Y.; Wei, Y.; Peng, G. et al.; Li, Y.; Wang, J.: The structure differences of Japanese encephalitis virus SA14 and SA14-14-2 E proteins elucidate the virulence attenuation mechanism. Protein and Cell 10 (2), pp. 149 - 153 (2019)

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Journal Article

Richter, M.; Moroniak, S. J.; Michel, H.: Identification of competitive inhibitors of the human taurine transporter TauT in a human kidney cell line. Pharmacological Reports 71 (1), pp. 121 - 127 (2019)

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Journal Article

Chang, C.; Young, L. N.; Morris, K. L.; Bülow, S. v.; Schöneberg, J.; Yamamoto-Imoto, H.; Oe, Y.; Yamamoto, K.; Nakamura, S.; Stjepanovic, G. et al.; Hummer, G.; Yoshimori, T.; Hurley, J. H.: Bidirectional Control of Autophagy by BECN1 BARA Domain Dynamics. Molecular Cell 73 (2), pp. 339 - 353 (2019)

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Journal Article

Xie, H.; Valsamidis, G.; Mathioudaki, E.; Tsiotis, G.: Complete Genome Sequence of Pseudomonas sp. Strain phDV1, an Isolate Capable of Efficient Degradation of Aromatic Hydrocarbons. Microbiology Resource Announcement 8 (2), e01171-18 (2019)

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Journal Article

Patiño-Ruiz, M.; Dwivedi, M.; Călinescu, O.; Karabel, M.; Padan, E.; Fendler, K.: Replacement of Lys-300 with a glutamine in the NhaA Na⁺/H⁺ antiporter of Escherichia coli yields a functional electrogenic transporter. The Journal of Biological Chemistry 294 (1), pp. 246 - 256 (2019)

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Journal Article

Böger, C.; Baldering, T. N.; Krüger, C. L.; Harwardt, M.-L. I. E.; Mertinkus, K. R.; Schröder, M. S.; Karathanasis, C.; Deußner-Helfmann, N. S.; Barth, H.-D.; Malkusch, S. et al.; Dietz, M. S.; Hummer, G.; Wohland, T.; Heilemann, M.: Quantification of membrane receptor complexes with single-molecule localization microscopy. Proceedings of SPIE 10884, 108840T (2019)

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Journal Article

Kühlbrandt, W.: Structure and Mechanisms of F-Type ATP Synthases. Annual Review of Biochemistry 88, pp. 515 - 549 (2019)

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Journal Article

Sousa, J. S.; Vonck, J.: Respiratory supercomplexes III₂IV₂ come into focus. Nature Structural and Molecular Biology 26 (2), pp. 87 - 89 (2019)

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Book Chapter (3)

2019

Book Chapter

Leigh, K. E.; Navarro, P. P.; Scaramuzza, S.; Chen, W.; Zhang, Y.; Castaño-Díez, D.; Kudryashev, M.: Subtomogram averaging from cryo-electron tomograms. In: Methods in Cell Biology, Vol. 152, 1 Ed., pp. 217 - 259 (Ed. Müller-Reichert, T.). Academic Press (2019)

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Book Chapter

Köfinger, J.; Rózycki, B.; Hummer, G.: Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods. In: Methods in Molecular Biology, Vol. 2022, pp. 341 - 352. Springer (2019)

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Book Chapter

Sánchez, R.; Mester, R.; Kudryashev, M.: Fast Cross Correlation for Limited Angle Tomographic Data. In: Lecture Notes in Computer Science (LNCS), Vol. 11482, pp. 415 - 426 (Eds. Felsberg, M.; Forssén, P.-E.; Sintorn, I.-M.; Unger, J.). Springer (2019)

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Conference Paper (3)

2019

Conference Paper

Lyons, J. A.; Laban, M.; Januliene, D.; Ustrup, J.; Montigny, C.; Dieudonné, T.; Guinot, V.; Kühlbrandt, W.; Lenoir, G.; Möller, A. et al.; Nissen, P.: Structural Insights into the Function and Auto-Regulation of Lipid Flippases. 63rd Annual Meeting of the Biophysical-Society, Baltimore, March 02, 2019 - March 06, 2019. Biophysical Journal (Annual Meeting Abstracts) 116 (3), 170A, (2019)

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Conference Paper

Eder, M.; Dordic, A.; Sagmeister, T.; Damisch, E.; Vejzovic, D.; Berni, F.; Codee, J.; Palva, A.; Vonck, J.; Oberer, M. et al.; Pavkov-Keller, T.: Surface layer proteins of lactobacilli – determining the cell wall binding and their antibacterial effect. Acta Crystallographica Section A: Foundations and Advances 75, E196, (2019)

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Conference Paper

Hofer, G.; Payer, S. E.; Plasch, K.; Baerland, N.; Marschall, S. A.; Sheng, X.; Vonck, J.; Gruber, K.; Himo, F.; Leys, D. et al.; Faber, K.; Keller, W.; Glueck, S. M.; Pavkov-Keller, T.: Regioselective carboxylation by prenylated flavin and Mn-dependent decarboxylases. Acta Crystallographica Section A: Foundations and Advances 75, E119, (2019)

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Thesis - PhD (9)

2019

Thesis - PhD

Zakrzewska, S.: Structural and functional characterization of a MATE family multidrug resistance transporter from Pyrococcus furiosus. Dissertation, 175 pp., Fachbereich Biochemie, Chemie und Pharmazie, Goethe Universität Frankfurt, Frankfurt am Main (2019)

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Thesis - PhD

Sousa, J. S.: Structural characterization of membrane protein complexes by single-particle cryo-EM. Dissertation, 191 pp., Fachbereich 14 (Biochemie, Chemie, Pharmazie), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

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Thesis - PhD

Eisel, B.: Inhibition of F₁F₀ ATP synthases by bacterial virulence factors and photoswitchable azo-polyphenols. Dissertation, 259 pp., Fachbereich 14 (Biochemie, Chemie, Pharmazie), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - PhD

Sörmann, J.: Ionentransport in Krokinobakter Eikastus Rhodopsin-2. Dissertation, 158 pp., Fachbereich 14 (Biochemie, Chemie, Pharmazie), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - PhD

Warnau, J.: Computational Studies of Membrane-bound Proteins Na⁺/H⁺-Antiporter and Respiratory Complex I. Dissertation, 97 pp., Fakultät für Chemie, Technische Universität München, Garching bei München (2019)

MPG.PuRe

Thesis - PhD

Vögele, M.: Theory and Simulation of Diffusion and Self-Assembly in Lipid Membranes. Dissertation, 242 pp., Fachbereich 13 (Physik), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - PhD

Liu, W.: Structural and Functional Study of NADH: ubiquinone Oxidoreductase (Complex 1) from Aquifex aeolicus. Dissertation, 147 pp., Fachbereich 14, (Biochemie, Chemie und Pharmazie) Goethe Universität-Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - PhD

Patiño-Ruiz, M.: Electrophysiological investigation of CPA2 Na⁺/H⁺ antiporters: Evaluation of the role of Lysine 300 in Escherichia coli NhaA and characterization of Homo sapiens NHA2. Dissertation, 189 pp., Fachbereich 14 (Biochemie, Chemie, Pharmazie), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - PhD

Richter, M.: Funktionelle und strukturelle Charakterisierung von SLC-Transportern in eukaryotischen Systemen. Dissertation, 166 pp., Fachbereich Biochemie, Chemie und Pharmazie, Goethe Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master (12)

2019

Thesis - Master

Steinhilper, R.: Structural characterization of the E. coli formate hydrogenlyase complex by cryo electron microscopy. Master, 82 pp., Philipps University of Marburg, Marburg (2019)

MPG.PuRe

Thesis - Master

Wang, Y.: Functional Investigation of Light-driven sodium pump KR2 mutants in the ion transport pathway. Master, 54 pp., Fachbereich 13 (Physik), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Liu, J.: CryoEM analysis of the conformational cycle of the bacterial ABC transporter MsbA under turnover conditions. Master, 70 pp., Technische Universität München, München (2019)

MPG.PuRe

Thesis - Master

Ulitzka, M.: Native-like Expression Systems for Receptor-like Kinases of Plants. Master, 60 pp., Technische Universität Darmstadt, Darmstadt (2019)

MPG.PuRe

Thesis - Master

Pfeil-Gardiner, O.: Comparing liquid helium and liquid nitrogen cooling for high-resolution cryo-EM of a test specimen. Master, 43 pp., Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Gemeinhardt, T. M.: Transport mechanism of the SLC23 transporter family. Master, 114 pp., Fachbereich 14 (Biochemie, Chemie, Pharmazie), Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Zöller, J.: Structural dynamics of membrane embedded oxidoreductases investigated by HDX-MS. Master, 70 pp., Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Gebauer, R.: Enrichment of extracellular vesicles with human NMDA receptors for native-like structure determination by cryo-electron tomography. Master, 75 pp., Fachbereich Physik, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Reichhart, T.: Functional and Structural Investigation of the Reductant ABC Transporter CydDC from E.coli. Master, 92 pp., Institute of Biochemistry, Goethe University Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Siebert, J.: Is SorCS1 autoinhibited? Biochemical and biophysical characterization of SorCS1. Master, 73 pp., Goethe-Universität Frankfurt, Frankfurt (2019)

MPG.PuRe

Thesis - Master

Jung, H.: Automatically discovering molecular reaction mechanisms. Master, 96 pp., Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe

Thesis - Master

Dávila, W. H. S.: Towards structural insights of the voltage-activated potassium channel 1.2 and its interaction with the gating modifier toxin ProTx-I. Master, 75 pp., Institut für Zellbiologie und Neurowissenschaft, Goethe-Universität Frankfurt, Frankfurt am Main (2019)

MPG.PuRe