Publications of Özkan Yildiz

Journal Article (49)

1.
Journal Article
Klusch, N.; Senkler, J.; Yildiz, Ö.; Kühlbrandt, W.; Braun, H.-P.: A ferredoxin bridge connects the two arms of plant mitochondrial complex I. The Plant Cell (2021)
2.
Journal Article
Yadav, S.; Centola, M.; Yildiz, Ö.; Pogoryelov, D.; Rai, L. C.; Schleiff, E.: Purification and Preliminary X-Ray Crystallographic Analysis of the Peptidyl-Prolyl cis-trans Isomerase Alr5059 from Anabaena sp. PCC 7120. Crystallography Reports 65 (7), pp. 1226 - 1230 (2020)
3.
Journal Article
Ngo, G.; Centola, M.; Krasnoselska, G.; Pogoryelov, D.; Yildiz, Ö.; Schleiff, E.: LptC from Anabaena sp. PCC 7120: Expression, purification and crystallization. Protein Expression and Purification 175, 105689 (2020)
4.
Journal Article
Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Reply to Desikan et al.: Micelle formation among various mechanisms of toxin pore formation. Proceedings of the National Academy of Sciences of the United States of America 117 (10), pp. 5109 - 5110 (2020)
5.
Journal Article
Warnau, J.; Wöhlert, D.; Okazaki, K.-I.; Yildiz, Ö.; Gamiz-Hernandez, A. P.; Kaila, V. R. I.; Kühlbrandt, W.; Hummer, G.: Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation. The Journal of Physical Chemistry B 124 (2), pp. 336 - 344 (2020)
6.
Journal Article
Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Membrane perforation by the pore-forming toxin pneumolysin. Proceedings of the National Academy of Sciences of the United States of America 116 (27), pp. 13352 - 13357 (2019)
7.
Journal Article
Murphy, B. J.; Klusch, N.; Langer, J. D.; Mills, D.; Yildiz, Ö.; Kühlbrandt, W.: Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling. Science 364 (6446), eaaw9128, p. 1155 (2019)
8.
Journal Article
Yilmaz, I.; Yildiz, Ö.; Korkmaz, F.: Structural properties of an engineered outer membrane protein G mutant, OmpG-16SL, investigated with infrared spectroscopy. Journal of Biomolecular Structure and Dynamics 37 (2019)
9.
Journal Article
Okazaki, K.-i.; Wöhlert, D.; Warnau, J.; Jung, H.; Yildiz, Ö.; Kühlbrandt, W.; Hummer, G.: Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature Communications 10, 1742 (2019)
10.
Journal Article
Klusch, N.; Murphy, B. J.; Mills, D.; Yildiy, Ö.; Kühlbrandt, W.: Structural basis of proton translocation and force generation in mitochondrial ATP synthase. eLife 6, e33274 (2017)
11.
Journal Article
van Pee, K.; Neuhaus, A.; D'Imprima, E.; Mills, D. J.; Kühlbrandt, W.; Yildiz, Ö.: CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin. eLife 6, e23644 (2017)
12.
Journal Article
Weston, C. E.; Krämer, A.; Colin, F.; Yildiz, Ö.; Baud, M. G. J.; Meyer-Almes, F.-J.; Fuchter, M. J.: Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors. ACS Infect. Dis. 3 (2), pp. 152 - 161 (2017)
13.
Journal Article
Călinescu, O.; Linder, M.; Wöhlert, D.; Yildiz, Ö.; Kühlbrandt, W.; Fendler, K.: Electrogenic Cation Binding in the Electroneutral Na+/H+ Antiporter of Pyrococcus abyssi. The Journal of Biological Chemistry 291 (52), pp. 26786 - 26793 (2016)
14.
Journal Article
van Pee, K.; Mulvihill, E.; Müller, D. J.; Yildiz, Ö.: Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae. Nano Letters 16 (12), pp. 7915 - 7924 (2016)
15.
Journal Article
Wöhlert, D.; Grötzinger, M. J.; Kühlbrandt, W.; Yildiz, Ö.: Mechanism of Na+-dependent citrate transport from the structure of an asymmetrical CitS dimer. eLife 4, e09375 (2015)
16.
Journal Article
Korkmaz, F.; van Pee, K.; Yildiz, Ö.: IR-spectroscopic characterization of an elongated OmpG mutant. Archives of Biochemistry and Biophysics 576, pp. 73 - 79 (2015)
17.
Journal Article
Köster, S.; van Pee, K.; Yildiz, Ö.: Crystallization of the Outer Membrane Protein OmpG from Escherichia coli. Bacterial Pathogenesis, Pt C 557, pp. 149 - 166 (2015)
18.
Journal Article
Mulvihill, E.; van Pee, K.; Mari, S. A.; Müller, D. J.; Yildiy, Ö.: Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O. Nano Letters 15, pp. 6965 - 6973 (2015)
19.
Journal Article
Preiss, L.; Langer, J. D.; Yildiz, Ö.; Eckhardt-Strelau, L.; Guillemont, J. E. G.; Koul, A.; Meier, T.: Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline. Science Advances 1 (4), pp. 1 - 8 (2015)
20.
Journal Article
Paulino, C.; Wöhlert, D.; Kapotova, E.; Yildiz, Ö.; Kühlbrandt, W.: Structure and transport mechanism of the sodium/proton antiporter MjNhaP1. eLife 3, e03583 (2014)
21.
Journal Article
Wöhlert, D.; Kühlbrandt, W.; Yildiz, Ö.: Structure and substrate ion binding in the sodium/proton antiporter PaNhaP. eLife 3, e03579 (2014)
22.
Journal Article
Aktas, M.; Köster, S.; Kizilirmak, S.; Casanova, J. C.; Betz, H.; Fritz, C.; Moser, R.; Yildiz, Ö.; Narberhaus, F.: Enzymatic properties and substrate specificity of a bacterial phosphatidylcholine synthase. The FEBS Journal 281 (15), pp. 3523 - 3541 (2014)
23.
Journal Article
Daum, B.; Quax, T. E. F.; Sachse, M.; Mills, D. J.; Reimann, J.; Yildiz, Ö.; Häder, S.; Saveanu, C.; Forterre, P.; Albers, S.-V. et al.; Kühlbrandt, W.; Prangishvili, D.: Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids. Proceedings of the National Academy of Sciences of the United States of America 111 (10), pp. 3829 - 3834 (2014)
24.
Journal Article
Matthies, D.; Zhou, W.; Klyszejko, A. L.; Anselmi, C.; Yildiz, Ö.; Brandt, K.; Müller, V.; Faraldo-Gómez, J. D.; Faraldo-Gómez, J. D.; Meier, T. et al.; Meier, T.: High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na+-coupled ATP synthase. Nature Communications 5, 5286 (2014)
25.
Journal Article
Preiss, L.; Langer, J. D.; Hicks, D. B.; Liu, J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle. Molecular Microbiology 92 (5), pp. 973 - 984 (2014)
26.
Journal Article
Koshy, C.; Schweikhard, E. S.; Gärtner, R. M.; Perez, C.; Yildiz, Ö.; Ziegler, C.: Structural evidence for functional lipid interactions in the betaine transporter BetP. The EMBO Journal 32 (23), pp. 3096 - 3105 (2013)
27.
Journal Article
Preiss, L.; Klyszejko, A. L.; Hicks, D. B.; Liu, J.; Fackelmayer, O. J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4. Proceedings of the National Academy of Sciences of the USA 110 (19), pp. 7874 - 7879 (2013)
28.
Journal Article
Schulz, S.; Iglesias-Cans, M.; Krah, A.; Yildiz, Ö.; Leone, V.; Matthies, D.; Cook, G. M.; Faraldo-Gómez, J. D.; Meier, T.: A New Type of Na+-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. PLoS Biology 11 (6), e1001596, pp. 1 - 12 (2013)
29.
Journal Article
Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: In situ opening/closing of OmpG from E. coli and the splitting of β-sheet signals in ATR–FTIR spectroscopy. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 91, pp. 395 - 401 (2012)
30.
Journal Article
Perez, C.; Koshy, C.; Yildiz, Ö.; Ziegler, C.: Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP. Nature 490, pp. 126 - 130 (2012)
31.
Journal Article
Damaghi, M.; Köster, S.; Yildiz, Ö.; Müller, D. J.: One β Hairpin Follows the Other: Exploring Refolding Pathways and Kinetics of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie International Edition 50 (32), pp. 7422 - 7424 (2011)
32.
Journal Article
Goswami, P.; Paulino, C.; Hizlan, D.; Vonck, J.; Yildiz, Ö.; Kühlbrandt, W.: Structure of the archaeal Na+/H+ antiporter NhaP1 and functional role of transmembrane helix 1. The EMBO Journal 30, pp. 439 - 449 (2011)
33.
Journal Article
Köster, S.; Pavkov-Keller, T.; Kühlbrandt, W.; Yildiz, Ö.: Structure of Human Na+/H+ Exchanger NHE1 Regulatory Region in Complex with Calmodulin and Ca2+. The Journal of Biological Chemistry 286, pp. 40954 - 40961 (2011)
34.
Journal Article
Damaghi, M.; Bippes, C.; Köster, S.; Yildiz, Ö.; Mari, S. A.; Kühlbrandt, W.; Muller, D. J.: pH-Dependent Interactions Guide the Folding and Gate the Transmembrane Pore of the β-Barrel Membrane Protein OmpG. Journal of Molecular Biology 397 (4), pp. 878 - 882 (2010)
35.
Journal Article
Damaghi, M.; Sapra, K. T.; Köster, S.; Yildiz, Ö.; Kühlrandt, W.; Muller, D. J.: Dual energy landscape: The functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape. Proteomics 10 (23), pp. 4151 - 4162 (2010)
36.
Journal Article
Korkmaz-Özkan, F.; Köster, S.; Kühlbrandt, W.; Mäntele, W.; Yildiz, Ö.: Correlation between the OmpG Secondary Structure and Its pH-Dependent Alterations Monitored by FTIR. Journal of Molecular Biology 401 (1), pp. 56 - 67 (2010)
37.
Journal Article
Mari, S. A.; Köster, S.; Bippes, C. A.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: pH-Induced Conformational Change of the β-Barrel-Forming Protein OmpG Reconstituted into Native E. coli Lipids. Journal of Molecular Biology 396 (3), pp. 610 - 616 (2010)
38.
Journal Article
Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)
39.
Journal Article
Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)
40.
Journal Article
Preiss, L.; Yildiz, Ö.; Hicks, D. B.; Krulwich, T. A.; Meier, T.: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring. PLoS Biology 8 (8), 4e1000443. doi:10.1371/journal.pbio.1000443, pp. 1 - 15 (2010)
41.
Journal Article
Köster, S.; Kühlbrandt, W.; Yildiz, Ö.: Purification, crystallization and preliminary X-ray diffraction analysis of the FeoB G domain from Methanococcus jannaschii. Acta Crystallographica F65, pp. 684 - 687 (2009)
42.
Journal Article
Köster, S.; Wehner, M.; Herrmann, C.; Kühlbrandt, W.; Yildiz, Ö.: Structure and Function of the FeoB G-Domain from Methanococcus jannaschii. Journal of Molecular Biology 392 (2), pp. 405 - 419 (2009)
43.
Journal Article
Pogoryelov, D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure of the rotor ring of a proton-dependent ATP synthase. Nature Structural and Molecular Biology 16 (10), pp. 1068 - 1073 (2009)
44.
Journal Article
Sapra, K. T.; Damaghi, M.; Köster, S.; Yildiy, Ö.; Kühlbrandt, W.; Muller, D. J.: One β Hairpin after the Other: Exploring Mechanical Unfolding Pathways of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie International Edition 48 (44), pp. 8306 - 8308 (2009)
45.
Journal Article
Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: The Role of Lipids for the Functional Integrity of Porin: An FTIR Study Using Lipid and Protein Reporter Groups. Biochemistry 47, pp. 12126 - 12134 (2008)
46.
Journal Article
Stieglitz, B.; Bee, C.; Schwarz, D.; Yildiz, Ö.; Moshnikova, A.; Khokhlatchev, A.; Herrmann, C.: Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II. The EMBO Journal 27 (14), pp. 1995 - 2005 (2008)
47.
Journal Article
Yildiz, Ö.; Kalthoff, C.; Raunser, S.; Kühlbrandt, W.: Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake. The EMBO Journal 26, pp. 589 - 599 (2007)
48.
Journal Article
Yildiz, O.; Vinothkumar, K. R.; Goswami, P.; Kühlbrandt, W.: Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation. The EMBO Journal 25, pp. 3702 - 3713 (2006)
49.
Journal Article
Yildiz, Ö.; Doi, M.; Yujnovsky, I.; Cardone, L.; Berndt, A.; Hennig, S.; Schulze, S.; Urbanke, C.; Sassone-Corsi, P.; Wolf, E.: Crystal Structure and Interactions of the PAS Repeat Region of the Drosophila Clock Protein PERIOD. Molecular Cell 7, pp. 69 - 82 (2005)
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