Max-Planck-Institut für Biophysik

Publikationen des Max-Planck-Institutes für Biophysik

Publikationen des Max-Planck-Institutes für Biophysik

Zeitschriftenartikel (74)

2022

Zeitschriftenartikel

Zhu, R.; Canena, D.; Sikora, M.; Klausberger, M.; Seferovic, H.; Mehdipour, A. R.; Hain, L.; Laurent, E.; Monteil, V.; Wirnsberger, G. et al.; Wieneke, R.; Tampé, R.; Kienzl, N. F.; Mach, L.; Mirazimi, A.; Oh, Y. J.; Penninger, J. M.; Hummer, G.; Hinterdorfer, P.: Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level. Nature Communications 13 (1), 7926 (2022)

MPG.PuRe

Zeitschriftenartikel

Jensen, L. E.; Rao, S.; Schuschnig, M.; Cada, A. K.; Martens, S.; Hummer, G.; Hurley, J. H.: Membrane curvature sensing and stabilization by the autophagic LC3 lipidation machinery. Science Advances 8 (50), eadd1436 (2022)

MPG.PuRe

Zeitschriftenartikel

Hammarén, H. M.; Geissen, E.-M.; Potel, C. M.; Beck, M.; Savitski, M. M.: Protein-Peptide Turnover Profiling reveals the order of PTM addition and removal during protein maturation. Nature Communications 13, 7431 (2022)

MPG.PuRe

Zeitschriftenartikel

Hoffmann, P. C.; Kreysing, J. P.; Khusainov, I.; Tuijtel, M.; Welsch, S.; Beck, M.: Structures of the eukaryotic ribosome and its translational states in situ. Nature Communications 13, 7435 (2022)

MPG.PuRe

Zeitschriftenartikel

Krause, D. S.; Dikic, I.: Mycobacterium tuberculosis hijacks ubiquitin to inhibit pyroptosis. Molecular Cell 82 (24), S. 4588 - 4590 (2022)

MPG.PuRe

Zeitschriftenartikel

Linke, M.; Quoika, P. K.; Bramas, B.; Köfinger, J.; Hummer, G.: Complexes++: Efficient and versatile coarse-grained simulations of protein complexes and their dense solutions. The Journal of Chemical Physics 157 (20), 204802 (2022)

MPG.PuRe

Zeitschriftenartikel

Laube, E.; Meier-Credo, J.; Langer, J. D.; Kühlbrandt, W.: Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum. Science Advances 8 (47), eadc9952 (2022)

MPG.PuRe

Zeitschriftenartikel

Schiller, J.; Laube, E.; Wittig, I.; Kühlbrandt, W.; Vonck, J.; Zickermann, V.: Insights into complex I assembly: Function of NDUFAF1 and a link with cardiolipin remodeling. Science Advances 8 (46), eadd3855 (2022)

MPG.PuRe

Zeitschriftenartikel

Oo, J. A.; Pálfi, K.; Warwick, T.; Wittig, I.; Prieto-Garcia, C.; Matkovic, V.; Tomašković, I.; Boos, F.; Izquierdo Ponce, J.; Teichmann, T. et al.; Petriukov, K.; Haydar, S.; Maegdefessel, L.; Wu, Z.; Pham, M. D.; Krishnan, J.; Baker, A. H.; Günther, S.; Ulrich, H. D.; Đikić, I.; Leisegang, M. S.; Brandes, R. P.: Long non-coding RNA PCAT19 safeguards DNA in quiescent endothelial cells by preventing uncontrolled phosphorylation of RPA2. Cell Reports: Methods 41 (7), 111670 (2022)

MPG.PuRe

Zeitschriftenartikel

Schaefer, S. L.; Hummer, G.: Sublytic gasdermin-D pores captured in atomistic molecular simulations. eLife 11, e81432 (2022)

MPG.PuRe

Zeitschriftenartikel

Kühlbrandt, W.: Concluding remarks: Challenges and future developments in biological electron cryo-microscopy. Faraday Discussions 240, S. 323 - 335 (2022)

MPG.PuRe

Zeitschriftenartikel

Siggel, M.; Kehl, S.; Reuter, K.; Köfinger, J.; Hummer, G.: TriMem: A parallelized hybrid Monte Carlo software for efficient simulations of lipid membranes. The Journal of Chemical Physics 157 (17), 174801 (2022)

MPG.PuRe

Zeitschriftenartikel

Astashkin, R.; Kovalev, K.; Bukhdruker, S.; Vaganova, S.; Kuzmin, A.; Alekseev, A.; Balandin, T.; Zabelskii, D.; Gushchin, I.; Royant, A. et al.; Volkov, D.; Bourenkov, G.; Koonin, E.; Engelhard, M.; Bamberg, E.; Gordeliy, V.: Structural insights into light-driven anion pumping in cyanobacteria. Nature Communications 13, 6460 (2022)

MPG.PuRe

Zeitschriftenartikel

Vitt, S.; Prinz, S.; Eisinger, M. L.; Ermler, U.; Buckel, W.: Purification and structural characterization of the Na⁺-translocating ferredoxin: NAD⁺ reductase (Rnf) complex of Clostridium tetanomorphum. Nature Communications 13, 6315 (2022)

MPG.PuRe

Zeitschriftenartikel

Shah, V. J.; Đikić, I.: Localization matters in targeted protein degradation. Cell Chemical Biology 29 (10), S. 1465 - 1466 (2022)

MPG.PuRe

Zeitschriftenartikel

Cruz-León, S.; Schwierz, N.: RNA Captures More Cations than DNA: Insights from Molecular Dynamics Simulations. The Journal of Physical Chemistry B (2022)

MPG.PuRe

Zeitschriftenartikel

Schleker, E. S. M.; Buschmann, S.; Xie, H.; Welsch, S.; Michel, H.; Reinhart, C.: Structural and functional investigation of ABC transporter STE6-2p from Pichia pastoris reveals unexpected interaction with sterol molecules. Proceedings of the National Academy of Sciences of the United States of America 126 (43), S. 8646 - 8654 (2022)

MPG.PuRe

Zeitschriftenartikel

Mathioudaki, E.; Alifragis, Y.; Fouskaki, M.; Chochlakis, D.; Xie, H.; Psaroulaki, A.; Tsiotis, G.; Chaniotakis, N.: Electrochemical Antigenic Sensor for the Diagnosis of Chronic Q Fever. Current Research in Biotechnology 4, S. 537 - 543 (2022)

MPG.PuRe

Zeitschriftenartikel

Lee, Y.; Haapanen, O.; Altmeyer, A.; Kühlbrandt, W.; Sharma, V.; Zickermann, V.: Ion transfer mechanisms in Mrp-type antiporters from high resolution cryoEM and molecular dynamics simulations. Nature Communications 13 (1), 6091 (2022)

MPG.PuRe

Zeitschriftenartikel

Schmitt, D.; Bozkurt, S.; Henning-Domres, P.; Huesmann, H.; Eimer, S.; Bindila, L.; Behrends, C.; Boyle, E.; Wilfling, F.; Tascher, G. et al.; Münch, C.; Behl, C.; Kern, A.: Lipid and protein content profiling of isolated native autophagic vesicles. EMBO Reports, e53065 (2022)

MPG.PuRe

Zeitschriftenartikel

Schulz, L.; Guo, Z.; Zarzycki, J.; Steinchen, W.; Schuller, J. M.; Heimerl, T.; Prinz, S.; Mueller-Cajar, O.; Erb, T. J.; Hochberg, G. K. A.: Evolution of increased complexity and specificity at the dawn of form I Rubiscos. Science 378 (6616), S. 155 - 160 (2022)

MPG.PuRe

Zeitschriftenartikel

Bieber, A.; Capitanio, C.; Erdmann, P. S.; Fiedler, F.; Beck, F.; Lee, C.-W.; Li, D.; Hummer, G.; Schulman, B. A.; Baumeister, W. et al.; Wilfling, F.: In situ structural analysis reveals membrane shape transitions during autophagosome formation. Proceedings of the National Academy of Sciences of the United States of America 119 (39), e2209823119 (2022)

MPG.PuRe

Zeitschriftenartikel

Zöller, J.; Hong, S.; Eisinger, M. L.; Anderson, M.; Radloff, M.; Desch, K.; Gennis, R.; Langer, J. D.: Ligand binding and conformational dynamics of the E. coli nicotinamide nucleotide transhydrogenase revealed by hydrogen/deuterium exchange mass spectrometry. Computational and Structural Biotechnology Journal 20, S. 5430 - 5439 (2022)

MPG.PuRe

Zeitschriftenartikel

Khera, R.; Mehdipour, A. R.; Bolla, J. R.; Kahnt, J.; Welsch, S.; Ermler, U.; Münke, C.; Robinson, C. V.; Hummer, G.; Xie, H. et al.; Michel, H.: Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism. The EMBO Journal 41 (18), e109990 (2022)

MPG.PuRe

Zeitschriftenartikel

Steinhilper, R.; Höff, G.; Heider, J.; Murphy, B. J.: Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli. Nature Communications 13, 5395 (2022)

MPG.PuRe

Zeitschriftenartikel

Mukherjee, R.; Dikic, I.: Regulation of Host-Pathogen Interactions via the Ubiquitin System. Annual Review of Microbiology 76, S. 211 - 233 (2022)

MPG.PuRe

Zeitschriftenartikel

Kafkia, E.; Andres-Pons, A.; Ganter, K.; Seiler, M.; Smith, T. S.; Andrejeva, A.; Jouhten, P.; Pereira, F.; Franco, C.; Kuroshchenkova, A. et al.; Leone, S.; Sawarkar, R.; Boston, R.; Thaventhiran, J.; Zaugg, J. B.; Lilley, K. S.; Lancrin, C.; Beck, M.; Patil, K. R.: Operation of a TCA cycle subnetwork in the mammalian nucleus. Science Advances 8 (35), eabq5206 (2022)

MPG.PuRe

Zeitschriftenartikel

Mikolajczyk, K.; Sikora, M.; Hanus, C.; Kaczmarek, R.; Czerwinski, M.: One of the two N-glycans on the human Gb3/CD77 synthase is essential for its activity and allosterically regulates its function. Biochemical and Biophysical Research Communications (Orlando, FL) 617, S. 36 - 41 (2022)

MPG.PuRe

Zeitschriftenartikel

Palacio-Rodriguez, K.; Vroylandt, H.; Stelzl, L. S.; Pietrucci, F.; Hummer, G.; Cossio, P.: Transition Rates and Efficiency of Collective Variables from Time-Dependent Biased Simulations. The Journal of Physical Chemistry Letters 13 (32), S. 7490 - 7496 (2022)

MPG.PuRe

Zeitschriftenartikel

Sušac, L.; Vuong, M. T.; Thomas, C.; von Bülow, S.; O'Brien-Ball, C.; Santos, A. M.; Fernandes, R. A.; Hummer, G.; Tampé, R.; Davis, S. J.: Structure of a fully assembled tumor-specific T cell receptor ligated by pMHC. Cell 185 (17), S. 3201 - 3213 (2022)

MPG.PuRe

publisher-version

Zeitschriftenartikel

Bullerjahn, J. T.; Hummer, G.: Reversible bond kinetics from single-molecule force spectroscopy experiments close to equilibrium. Physical Review Research 4 (3), 033097 (2022)

MPG.PuRe

Zeitschriftenartikel

Sinning, I.; McDowell, M. A.: Cryo-EM insights into tail-anchored membrane protein biogenesis in eukaryotes. Current Opinion in Structural Biology 75, 102428 (2022)

MPG.PuRe

Zeitschriftenartikel

Fábián, B.; Thallmair, S.; Hummer, G.: Small ionic radii limit time step in Martini 3 molecular dynamics simulations. The Journal of Chemical Physics 157 (3), 034101 (2022)

MPG.PuRe

Zeitschriftenartikel

Meier-Credo, J.; Preiss, L.; Wüllenweber, I.; Resemann, A.; Nordmann, C.; Zabret, J.; Suckau, D.; Michel, H.; Nowacyk, M. M.; Meier, T. et al.; Langer, J. D.: Top-Down Identification and Sequence Analysis of Small Membrane Proteins Using MALDI-MS/MS. Journal of the American Society for Mass Spectrometry 33 (7), S. 1293 - 1302 (2022)

MPG.PuRe

Zeitschriftenartikel

Enenkel, C.; Kang, R. W.; Wilfling, F.; Ernst, O. P.: Intracellular localization of the proteasome in response to stress conditions. The Journal of Biological Chemistry 298 (7), 102083 (2022)

MPG.PuRe

Zeitschriftenartikel

Hollenstein, D. M.; Veis, J.; Romanov, N.; Gérecová, G.; Ogris, E.; Hartl, M.; Ammerer, G.; Reiter, W.: PP2A^Rts1 antagonizes Rck2-mediated hyperosmotic stress signaling in yeast. Microbiological Research 260, 127031 (2022)

MPG.PuRe

Zeitschriftenartikel

Heinz, V.; Jäckel, W.; Kaltwasser, S.; Cutugno, L.; Bedrunka, P.; Graf, A.; Reder, A.; Michalik, S.; Dhople, V. M.; Madei, M. G. et al.; Conway, M.; Lechner, M.; Riedel, K.; Bange, G.; Boyd, A.; Völker, U.; Lewis, R. J.; Marles-Wright, J.; Ziegler, C.; Pané-Farré, J.: The Vibrio vulnificus stressosome is an oxygen-sensor involved in regulating iron metabolism. Communications Biology 5, 622 (2022)

MPG.PuRe

Zeitschriftenartikel

Miksys, A.; Fu, L.; Madej, M. G.; Guerreiro, D. N.; Kaltwasser, S.; Conway, M.; Ejder, S.; Bruckmann, A.; Marles-Wright, J.; Lewis, R. J. et al.; O'Byrne, C.; Pané-Farré, J.; Ziegler, C.: Molecular insights into intra-complex signal transmission during stressosome activation. Communications Biology 5, 621 (2022)

MPG.PuRe

Zeitschriftenartikel

Kayastha, K.; Katsyv, A.; Himmrich, C.; Welsch, S.; Schuller, J. M.; Ermler, U.; Müller, V.: Structure-based electron-confurcation mechanism of the Ldh-EtfAB complex. eLife 11, e77095 (2022)

MPG.PuRe

Zeitschriftenartikel

Aziz, I.; Kaltwasser, S.; Kayastha, K.; Khera, R.; Vonck, J.; Ermler, U.: The molybdenum storage protein forms and deposits distinct polynuclear tungsten oxygen aggregates. Journal of Inorganic Biochemistry 234, 111904 (2022)

MPG.PuRe

Zeitschriftenartikel

Cruz-León, S.; Vanderlinden, W.; Müller, P.; Forster, T.; Staudt, G.; Lin, Y.-Y.; Lipfert, J.; Schwierz, N.: Twisting DNA by salt. Nucleic Acids Research (London) 50 (10), S. 5726 - 5739 (2022)

MPG.PuRe

Zeitschriftenartikel

Mosalaganti, S.; Obarska-Kosinska, A.; Siggel, M.; Taniguchi, R.; Turoňová, B.; Zimmerli, C. E.; Buczak, K.; Schmidt, F. H.; Margiotta, E.; Mackmull, M.-T. et al.; Hagen, W. J. H.; Hummer, G.; Kosinski, J.; Beck, M.: AI-based structure prediction empowers integrative structural analysis of human nuclear pores. Science 376 (6598), eabm9506 (2022)

MPG.PuRe

Zeitschriftenartikel

Cullati, S. N.; Chaikuad, A.; Chen, J.-S.; Gebel, J.; Tesmer, L.; Zhubi, R.; Navarrete-Perea, J.; Guillen, R. X.; Gygi, S. P.; Hummer, G. et al.; Dötsch, V.; Knapp, S.; Gould, K. L.: Kinase domain autophosphorylation rewires the activity and substrate specificity of CK1 enzymes. Molecular Cell 82 (11), S. 2006 - 2020.e8 (2022)

MPG.PuRe

Zeitschriftenartikel

Qiao, S.; Lee, C.-W.; Sherpa, D.; Chrustowicz, J.; Cheng, J.; Duennebacke, M.; Steigenberger, B.; Karayel, O.; Vu, D. T.; von Gronau, S. et al.; Mann, M.; Wilfling, F.; Schulman, B. A.: Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation. Nature Communications 13, 3041 (2022)

MPG.PuRe

Zeitschriftenartikel

Lee, Y.; Wiriyasermkul, P.; Kongpracha, P.; Moriyama, S.; Mills, D. J.; Kühlbrandt, W.; Nagamori, S.: Ca²⁺-mediated higher-order assembly of heterodimers in amino acid transport system b^0,+ biogenesis and cystinuria. Nature Communications 13, 2708 (2022)

MPG.PuRe

Zeitschriftenartikel

Tiku, V.; Kew, C.; Kofoed, E. M.; Peng, Y.; Đikić, I.; Tan, M.-W.: Acinetobacter baumannii Secretes a Bioactive Lipid That Triggers Inflammatory Signaling and Cell Death. Frontiers in Microbiology 13, 870101 (2022)

MPG.PuRe

Zeitschriftenartikel

Borshchevskiy, V.; Kovalev, K.; Round, E.; Efremov, R.; Astashkin, R.; Bourenkov, G.; Bratanov, D.; Balandin, T.; Chizhov, I.; Baeken, C. et al.; Gushchin, I.; Kuzmin, A.; Alekseev, A.; Rogachev, A.; Willbold, D.; Engelhard, M.; Bamberg, E.; Büldt, G.; Gordeliy, V.: True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nature Structural and Molecular Biology 29 (5), S. 440 - 450 (2022)

MPG.PuRe

Zeitschriftenartikel

Ochoa, R.; Lunardelli, V. A. S.; Rosa, D. S.; Laio, A.; Cossio, P.: Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol. Frontiers in immunology 13, 862851 (2022)

MPG.PuRe

Zeitschriftenartikel

Cai, W.; Bullerjahn, J. T.; Lallemang, M.; Kroy, K.; Balzer, B. N.; Hugel, T.: Angle-dependent strength of a single chemical bond by stereographic force spectroscopy. Chemical Science 13 (19), S. 5734 - 5740 (2022)

MPG.PuRe

Zeitschriftenartikel

Gubas, A.; Dikic, I.: ER remodeling via ER-phagy. Molecular Cell 82 (8), S. 1492 - 1500 (2022)

MPG.PuRe

Zeitschriftenartikel

Fuks, C.; Falkner, S.; Schwierz, N.; Hengesbach, M.: Combining Coarse-Grained Simulations and Single Molecule Analysis Reveals a Three-State Folding Model of the Guanidine-II Riboswitch. Frontiers in Molecular Biosciences 9, 826505 (2022)

MPG.PuRe

Zeitschriftenartikel

Zhao, J.; Hellwig, N.; Djahanschiri, B.; Khera, R.; Morgner, N.; Ebersberger, I.; Wang, J.; Michel, H.: Assembly and Functional Role of PACE Transporter PA2880 from Pseudomonas aeruginosa. Microbiology Spectrum 10 (2), e01453-21 (2022)

MPG.PuRe

Zeitschriftenartikel

Yadav, S.; Centola, M.; Glaesmann, M.; Pogoryelov, D.; Ladig, R.; Heilemann, M.; Rai, L. C.; Yildiz, Ö.; Schleiff, E.: Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium. Nature Communications 13 (1), 1690 (2022)

MPG.PuRe

Zeitschriftenartikel

Grotz, K. K.; Schwierz, N.: Magnesium force fields for OPC water with accurate solvation, ion-binding, and water-exchange properties: Successful transfer from SPC/E. The Journal of Chemical Physics 156 (11), 114501 (2022)

MPG.PuRe

Zeitschriftenartikel

Weidenweber, S.; Schühle, K.; Lippert, M.-L.; Mock, J.; Seubert, A.; Demmer, U.; Ermler, U.; Heider, J.: Finis tolueni: a new type of thiolase with an integrated Zn-finger subunit catalyses the final step of anaerobic toluene metabolism. The FEBS Journal 5, 166 (2022)

MPG.PuRe

Zeitschriftenartikel

Desch, K.; Schuman, E. M.; Langer, J. D.: Quantifying phosphorylation dynamics in primary neuronal cultures using LC-MS/MS. STAR Protocols 3 (1), 101063 (2022)

MPG.PuRe

Zeitschriftenartikel

Di Fraia, D.; Anitei, M.; Mackmull, M.-T.; Parca, L.; Behrendt, L.; Andres-Pons, A.; Gilmour, D.; Helmer Citterich, M.; Kaether, C.; Beck, M. et al.; Ori, A.: Conserved exchange of paralog proteins during neuronal differentiation. Life science alliance 5 (6), e202201397 (2022)

MPG.PuRe

Zeitschriftenartikel

Seidel, M.; Becker, A.; Pereira, F.; Landry, J. J. M.; de Azevedo, N. T. D.; Fusco, C. M.; Kaindl, E.; Romanov, N.; Baumbach, J.; Langer, J. D. et al.; Schuman, E. M.; Patil, K. R.; Hummer, G.; Benes, V.; Beck, M.: Co-translational assembly orchestrates competing biogenesis pathways. Nature Communications 13, 1224 (2022)

MPG.PuRe

Zeitschriftenartikel

Boyle, E.; Wilfling, F.: Bypassing the nuclear gate: A non-canonical entry pathway for the mitochondrial pyruvate dehydrogenase complex. Molecular Cell 82 (5), S. 886 - 888 (2022)

MPG.PuRe

Zeitschriftenartikel

Kühlbrandt, W.: Forty years in cryoEM of membrane proteins. Microscopy 71 (Supplement 1), S. i30 - i50 (2022)

MPG.PuRe

Zeitschriftenartikel

Lo, W.-T.; Zhang, Y.; Vadas, O.; Roske, Y.; Gulluni, F.; De Santis, M. C.; Zagar, A. V.; Stephanowitz, H.; Hirsch, E.; Liu, F. et al.; Daumke, O.; Kudryashev, M.; Haucke, V.: Structural basis of phosphatidylinositol 3-kinase C2α function. Nature Structural and Molecular Biology 29 (3), S. 218 - 228 (2022)

MPG.PuRe

Zeitschriftenartikel

Stelzl, L. S.; Pietrek, L. M.; Holla, A.; Oroz, J.; Sikora, M.; Köfinger, J.; Schuler, B.; Zweckstetter, M.; Hummer, G.: Global Structure of the Intrinsically Disordered Protein Tau Emerges from Its Local Structure. JACS Au 2 (3), S. 673 - 686 (2022)

MPG.PuRe

Zeitschriftenartikel

Hards, K.; Cheung, C.-Y.; Waller, N.; Adolph, C.; Keighley, L.; Tee, Z. S.; Harold, L. K.; Menorca, A.; Bujaroski, R. S.; Buckley, B. J. et al.; Tyndall, J. D.A.; McNeil, M. B.; Rhee, K. Y.; Opel-Reading, H. K.; Krause, K.; Preiss, L.; Langer, J. D.; Meier, T.; Hasenoehrl, E. J.; Berney, M.; Kelso, M. J.; Cook, G. M.: An amiloride derivative is active against the F₁F_o-ATP synthase and cytochrome bd oxidase of Mycobacterium tuberculosis. Communications Biology 5 (1), 166 (2022)

MPG.PuRe

Zeitschriftenartikel

Lambert, E.; Mehdipour, A. R.; Schmidt, A.; Hummer, G.; Perez, C.: Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter. Nature Communications 13 (1), 1022 (2022)

MPG.PuRe

Zeitschriftenartikel

Slováková, J.; Sikora, M.; Arslan, F. N.; Caballero-Mancebo, S.; Krens, S. F. G.; Kaufmann, W. A.; Merrin, J.; Heisenberg, C.-P.: Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells. Proceedings of the National Academy of Sciences of the United States of America 119 (8), e2122030119 (2022)

MPG.PuRe

Zeitschriftenartikel

Neumann, J.; Schwierz, N.: Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA. Journal of Chemical Theory and Computation 18 (2), S. 1202 - 1212 (2022)

MPG.PuRe

Zeitschriftenartikel

Gruijs da Silva, L. A.; Simonetti, F.; Hutten, S.; Riemenschneider, H.; Sternburg, E. L.; Pietrek, L. M.; Gebel, J.; Dötsch, V.; Edbauer, D.; Hummer, G. et al.; Stelzl, L. S.; Dormann, D.: Disease-linked TDP-43 hyperphosphorylation suppresses TDP-43 condensation and aggregation. EMBO Journal 41 (3), e108443 (2022)

MPG.PuRe

Zeitschriftenartikel

Bazzone, A.; Tesmer, L.; Kurt, D.; Kaback, H. R.; Fendler, K.; Madej, M. G.: Investigation of sugar binding kinetics of the E. coli sugar/H⁺ symporter XylE using solid-supported membrane-based electrophysiology. The Journal of Biological Chemistry 298 (2), 101505 (2022)

MPG.PuRe

Zeitschriftenartikel

Sanchez, C. P.; Patra, P.; Chang, S.-Y. S.; Karathanasis, C.; Hanebutte, L.; Kilian, N.; Cyrklaff, M.; Heilemann, M.; Schwarz, U. S.; Kudryashev, M. et al.; Lanzer, M.: KAHRP dynamically relocalizes to remodeled actin junctions and associates with knob spirals in P. falciparum-infected erythrocytes. Molecular Microbiology 117 (2), S. 274 - 292 (2022)

MPG.PuRe

Zeitschriftenartikel

Tyagi, A.; Ahmed, T.; Jian, S.; Bajaj, S.; Ong, S. T.; Goay, S. S. M.; Zhao, Y.; Vorobyov, I.; Tian, C.; Chandy, K. G. et al.; Bhushan, S.: Rearrangement of a unique Kv1.3 selectivity filter conformation upon binding of a drug. Proceedings of the National Academy of Sciences of the United States of America 119 (5), e2113536119 (2022)

MPG.PuRe

Zeitschriftenartikel

Ahrens, C. H.; Wade, J. T.; Champion, M. M.; Langer, J. D.: A Practical Guide to Small Protein Discovery and Characterization using Mass Spectrometry. Journal of Bacteriology 204 (1), e0035321 (2022)

MPG.PuRe

Zeitschriftenartikel

Grotz, K. K.; Schwierz, N.: Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D. Journal of Chemical Theory and Computation 18 (1), S. 526 - 537 (2022)

MPG.PuRe

Zeitschriftenartikel

Heerde, T.; Rennegarbe, M.; Biedermann, A.; Savran, D.; Pfeiffer, P. B.; Hitzenberger, M.; Baur, J.; Puscalau-Girtu, I.; Zacharias, M.; Schwierz, N. et al.; Haupt, C.; Schmidt, M.; Fändrich, M.: Cryo-EM demonstrates the in vitro proliferation of an ex vivo amyloid fibril morphology by seeding. Nature Communications 13 (1), 85 (2022)

MPG.PuRe

Zeitschriftenartikel

Gubas, A.; Đikić, I.: A guide to the regulation of selective autophagy receptors. The FEBS Journal 289 (1), S. 75 - 89 (2022)

MPG.PuRe

Buchkapitel (4)

2022

Buchkapitel

Alekseev, A.; Gordeliy, V.; Bamberg, E.: Rhodopsin-Based Optogenetics: Basics and Applications. In: Rhodopsin: Methods and Protocols, S. 71 - 100 (Hg. Gordeliy, V.). Springer, New York (2022)

MPG.PuRe

Buchkapitel

Gordeliy, V.; Kovalev, K.; Bamberg, E.; Rodriguez-Valera, F.; Zinovev, E.; Zabelskii, D.; Alekseev, A.; Rosselli, R.; Gushchin, I.; Okhrimenko, I.: Microbial Rhodopsins. In: Rhodopsin: Methods and Protocols, S. 1 - 52 (Hg. Gordeliy, V.). Springer, New York (2022)

MPG.PuRe

Buchkapitel

Ochoa, R.; Soler, M. A.; Gladich, I.; Battisti, A.; Minovski, N.; Rodriguez, A.; Fortuna, S.; Cossio, P.; Laio, A.: Computational Evolution Protocol for Peptide Design. In: Methods in Molecular Biology (MIMB), Bd. 2405, S. 335 - 359. Humana Press (2022)

MPG.PuRe

Buchkapitel

Xie, H.; Muenke, C.; Sommer, M.; Buschmann, S.; Michel, H.: Production of Membrane Proteins in Pseudomonas stutzeri. In: Methods in Molecular Biology, Bd. 2507, S. 91 - 110 (Hg. Mus-Veteau , I.). Humana Press, New York, NY (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit (10)

2022

Hochschulschrift - Doktorarbeit

Grötzinger, M.: Structural and functional insights into the citrate transporter seCits. Dissertation, 146 S., Fachbereich 14, Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Kayastha, K.: Structural insights into redox enzymes of anaerobic aromatic degradation and flavin-based electron bifurcation. Dissertation, 168 S., Fachbereich 15, Biowissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

von Bülow, S.: Molecular Simulations Towards Cell-Scale Processes. Dissertation, 197 S., Fachbereich Physik, Johann Wolfgang Goethe Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Klusch, N.: Structure and function of energy-converting membrane proteins. Dissertation, 270 S., Fachbereich Biowissenschaften, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Wu, D.: Structural Insights into human SLC7-SLC3 heterodimeric amino acid transporters. Dissertation, 192 S., Fachbereich Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Grund, T. N.: Structural and functional investigations of bd-cytochromes. Dissertation, 192 S., Fachbereich 14, Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Radloff, M.: Functional characterization of cytochrome bd-I oxidase from E. coli as a potential antimicrobial target. Dissertation, 117 S., Fachbereich 14, Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Kolbe, F. M.: Structural insights into the catalytic binuclear center of cytochrome c oxidase from Paracoccus denitrificans. Dissertation, 101 S., Fachbereich Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Cruz-León, S.: Metal Cations and Nucleic Acids: Accurate Force Fields and Atomistic Insights from Molecular Dynamics Simulations. Dissertation, 116 S., Fachbereich Biochemie, Chemie und Pharmazie, Johann Wolfgang Goethe Universität, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Doktorarbeit

Zhao, J.: Characterization of the multidrug transporters Aq_128 from Aquifex aeolicus and PA2880 from Pseudomonas aeruginosa. Dissertation, 174 S., Department of Chemical Engineering, Tianjin University, Tianjin, China (2022)

MPG.PuRe

Hochschulschrift - Habilitation (1)

2022

Hochschulschrift - Habilitation

Köfinger, J.: Integration of experimental data and molecular simulations. Habilitation, 79 S., Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2022)

MPG.PuRe

Hochschulschrift - Master (1)

2022

Hochschulschrift - Master

Sauer, K.: Deep Learning based approach for localizing and classifying particles and determining their orientations in cryo-electron tomograms with Convolutional Neural Networks and Spatial Transformer Networks. Master, 81 S., Johann Wolfgang Goethe-Universität, Frankfurt am Main (2022)

MPG.PuRe