Publications of the Max Planck Institute of Biophysics

Publications of Özkan Yildiz

Journal Article (48)

1.
Journal Article
Yadav, S.; Centola, M.; Glaesmann, M.; Pogoryelov, D.; Ladig, R.; Heilemann, M.; Rai, L. C.; Yildiz, Ö.; Schleiff, E.: Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium. Nature Communications 13 (1), 1690 (2022)
2.
Journal Article
Centola, M.; van Pee, K.; Betz, H.; Yildiz, Ö.: Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases. Nature Communications 12 (1), 6982 (2021)
3.
Journal Article
Klusch, N.; Senkler, J.; Yildiz, Ö.; Kühlbrandt, W.; Braun, H.-P.: A ferredoxin bridge connects the two arms of plant mitochondrial complex I. The Plant Cell 33 (6), pp. 2072 - 2091 (2021)
4.
Journal Article
Yadav, S.; Centola, M.; Yildiz, Ö.; Pogoryelov, D.; Rai, L. C.; Schleiff, E.: Purification and Preliminary X-Ray Crystallographic Analysis of the Peptidyl-Prolyl cis-trans Isomerase Alr5059 from Anabaena sp. PCC 7120. Crystallography Reports 65 (7), pp. 1226 - 1230 (2020)
5.
Journal Article
Ngo, G.; Centola, M.; Krasnoselska, G.; Pogoryelov, D.; Yildiz, Ö.; Schleiff, E.: LptC from Anabaena sp. PCC 7120: Expression, purification and crystallization. Protein Expression and Purification 175, 105689 (2020)
6.
Journal Article
Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Reply to Desikan et al.: Micelle formation among various mechanisms of toxin pore formation. Proceedings of the National Academy of Sciences of the United States of America 117 (10), pp. 5109 - 5110 (2020)
7.
Journal Article
Warnau, J.; Wöhlert, D.; Okazaki, K.-I.; Yildiz, Ö.; Gamiz-Hernandez, A. P.; Kaila, V. R. I.; Kühlbrandt, W.; Hummer, G.: Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation. The Journal of Physical Chemistry B 124 (2), pp. 336 - 344 (2020)
8.
Journal Article
Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Membrane perforation by the pore-forming toxin pneumolysin. Proceedings of the National Academy of Sciences of the United States of America 116 (27), pp. 13352 - 13357 (2019)
9.
Journal Article
Murphy, B. J.; Klusch, N.; Langer, J. D.; Mills, D.; Yildiz, Ö.; Kühlbrandt, W.: Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling. Science 364 (6446), eaaw9128, p. 1155 (2019)
10.
Journal Article
Yilmaz, I.; Yildiz, Ö.; Korkmaz, F.: Structural properties of an engineered outer membrane protein G mutant, OmpG-16SL, investigated with infrared spectroscopy. Journal of Biomolecular Structure and Dynamics 37 (2019)
11.
Journal Article
Okazaki, K.-i.; Wöhlert, D.; Warnau, J.; Jung, H.; Yildiz, Ö.; Kühlbrandt, W.; Hummer, G.: Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature Communications 10, 1742 (2019)
12.
Journal Article
Klusch, N.; Murphy, B. J.; Mills, D.; Yildiy, Ö.; Kühlbrandt, W.: Structural basis of proton translocation and force generation in mitochondrial ATP synthase. eLife 6, e33274 (2017)
13.
Journal Article
van Pee, K.; Neuhaus, A.; D'Imprima, E.; Mills, D. J.; Kühlbrandt, W.; Yildiz, Ö.: CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin. eLife 6, e23644 (2017)
14.
Journal Article
Weston, C. E.; Krämer, A.; Colin, F.; Yildiz, Ö.; Baud, M. G. J.; Meyer-Almes, F.-J.; Fuchter, M. J.: Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors. ACS Infect. Dis. 3 (2), pp. 152 - 161 (2017)
15.
Journal Article
Călinescu, O.; Linder, M.; Wöhlert, D.; Yildiz, Ö.; Kühlbrandt, W.; Fendler, K.: Electrogenic Cation Binding in the Electroneutral Na+/H+ Antiporter of Pyrococcus abyssi. The Journal of Biological Chemistry 291 (52), pp. 26786 - 26793 (2016)
16.
Journal Article
van Pee, K.; Mulvihill, E.; Müller, D. J.; Yildiz, Ö.: Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae. Nano Letters 16 (12), pp. 7915 - 7924 (2016)
17.
Journal Article
Wöhlert, D.; Grötzinger, M. J.; Kühlbrandt, W.; Yildiz, Ö.: Mechanism of Na+-dependent citrate transport from the structure of an asymmetrical CitS dimer. eLife 4, e09375 (2015)
18.
Journal Article
Korkmaz, F.; van Pee, K.; Yildiz, Ö.: IR-spectroscopic characterization of an elongated OmpG mutant. Archives of Biochemistry and Biophysics 576, pp. 73 - 79 (2015)
19.
Journal Article
Mulvihill, E.; van Pee, K.; Mari, S. A.; Müller, D. J.; Yildiy, Ö.: Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O. Nano Letters 15, pp. 6965 - 6973 (2015)
20.
Journal Article
Preiss, L.; Langer, J. D.; Yildiz, Ö.; Eckhardt-Strelau, L.; Guillemont, J. E. G.; Koul, A.; Meier, T.: Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline. Science Advances 1 (4), pp. 1 - 8 (2015)
21.
Journal Article
Paulino, C.; Wöhlert, D.; Kapotova, E.; Yildiz, Ö.; Kühlbrandt, W.: Structure and transport mechanism of the sodium/proton antiporter MjNhaP1. eLife 3, e03583 (2014)
22.
Journal Article
Wöhlert, D.; Kühlbrandt, W.; Yildiz, Ö.: Structure and substrate ion binding in the sodium/proton antiporter PaNhaP. eLife 3, e03579 (2014)
23.
Journal Article
Aktas, M.; Köster, S.; Kizilirmak, S.; Casanova, J. C.; Betz, H.; Fritz, C.; Moser, R.; Yildiz, Ö.; Narberhaus, F.: Enzymatic properties and substrate specificity of a bacterial phosphatidylcholine synthase. The FEBS Journal 281 (15), pp. 3523 - 3541 (2014)
24.
Journal Article
Preiss, L.; Langer, J. D.; Hicks, D. B.; Liu, J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle. Molecular Microbiology 92 (5), pp. 973 - 984 (2014)
25.
Journal Article
Daum, B.; Quax, T. E. F.; Sachse, M.; Mills, D. J.; Reimann, J.; Yildiz, Ö.; Häder, S.; Saveanu, C.; Forterre, P.; Albers, S.-V. et al.; Kühlbrandt, W.; Prangishvili, D.: Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids. Proceedings of the National Academy of Sciences of the United States of America 111 (10), pp. 3829 - 3834 (2014)
26.
Journal Article
Matthies, D.; Zhou, W.; Klyszejko, A. L.; Anselmi, C.; Yildiz, Ö.; Brandt, K.; Müller, V.; Faraldo-Gómez, J. D.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na+-coupled ATP synthase. Nature Communications 5, 5286 (2014)
27.
Journal Article
Koshy, C.; Schweikhard, E. S.; Gärtner, R. M.; Perez, C.; Yildiz, Ö.; Ziegler, C.: Structural evidence for functional lipid interactions in the betaine transporter BetP. The EMBO Journal 32 (23), pp. 3096 - 3105 (2013)
28.
Journal Article
Schulz, S.; Iglesias-Cans, M.; Krah, A.; Yildiz, Ö.; Leone, V.; Matthies, D.; Cook, G. M.; Faraldo-Gómez, J. D.; Meier, T.: A New Type of Na+-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. PLoS Biology 11 (6), e1001596, pp. 1 - 12 (2013)
29.
Journal Article
Preiss, L.; Klyszejko, A. L.; Hicks, D. B.; Liu, J.; Fackelmayer, O. J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4. Proceedings of the National Academy of Sciences of the United States of America 110 (19), pp. 7874 - 7879 (2013)
30.
Journal Article
Perez, C.; Koshy, C.; Yildiz, Ö.; Ziegler, C.: Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP. Nature 490, pp. 126 - 130 (2012)
31.
Journal Article
Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: In situ opening/closing of OmpG from E. coli and the splitting of β-sheet signals in ATR–FTIR spectroscopy. Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy 91, pp. 395 - 401 (2012)
32.
Journal Article
Köster, S.; Pavkov-Keller, T.; Kühlbrandt, W.; Yildiz, Ö.: Structure of Human Na+/H+ Exchanger NHE1 Regulatory Region in Complex with Calmodulin and Ca2+. The Journal of Biological Chemistry 286 (47), pp. 40954 - 40961 (2011)
33.
Journal Article
Damaghi, M.; Köster, S.; Yildiz, Ö.; Müller, D. J.: One β Hairpin Follows the Other: Exploring Refolding Pathways and Kinetics of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie, International Edition in English 50 (32), pp. 7422 - 7424 (2011)
34.
Journal Article
Goswami, P.; Paulino, C.; Hizlan, D.; Vonck, J.; Yildiz, Ö.; Kühlbrandt, W.: Structure of the archaeal Na+/H+ antiporter NhaP1 and functional role of transmembrane helix 1. The EMBO Journal 30 (2), pp. 439 - 449 (2011)
35.
Journal Article
Damaghi, M.; Sapra, K. T.; Köster, S.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: Dual energy landscape: The functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape. Proteomics 10 (23), pp. 4151 - 4162 (2010)
36.
Journal Article
Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)
37.
Journal Article
Korkmaz-Özkan, F.; Köster, S.; Kühlbrandt, W.; Mäntele, W.; Yildiz, Ö.: Correlation between the OmpG Secondary Structure and Its pH-Dependent Alterations Monitored by FTIR. Journal of Molecular Biology 401 (1), pp. 56 - 67 (2010)
38.
Journal Article
Preiss, L.; Yildiz, Ö.; Hicks, D. B.; Krulwich, T. A.; Meier, T.: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring. PLoS Biology 8 (8), e1000443 (2010)
39.
Journal Article
Damaghi, M.; Bippes, C.; Köster, S.; Yildiz, Ö.; Mari, S. A.; Kühlbrandt, W.; Muller, D. J.: pH-Dependent Interactions Guide the Folding and Gate the Transmembrane Pore of the β-Barrel Membrane Protein OmpG. Journal of Molecular Biology 397 (4), pp. 878 - 882 (2010)
40.
Journal Article
Mari, S. A.; Köster, S.; Bippes, C. A.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: pH-Induced Conformational Change of the β-Barrel-Forming Protein OmpG Reconstituted into Native E. coli Lipids. Journal of Molecular Biology 396 (3), pp. 610 - 616 (2010)
41.
Journal Article
Sapra, K. T.; Damaghi, M.; Köster, S.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: One β Hairpin after the Other: Exploring Mechanical Unfolding Pathways of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie, International Edition in English 48 (44), pp. 8306 - 8308 (2009)
42.
Journal Article
Pogoryelov, D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure of the rotor ring of a proton-dependent ATP synthase. Nature Structural and Molecular Biology 16 (10), pp. 1068 - 1073 (2009)
43.
Journal Article
Köster, S.; Wehner, M.; Herrmann, C.; Kühlbrandt, W.; Yildiz, Ö.: Structure and Function of the FeoB G-Domain from Methanococcus jannaschii. Journal of Molecular Biology 392 (2), pp. 405 - 419 (2009)
44.
Journal Article
Köster, S.; Kühlbrandt, W.; Yildiz, Ö.: Purification, crystallization and preliminary X-ray diffraction analysis of the FeoB G domain from Methanococcus jannaschii. Acta Crystallographie Section F Structural Biology and Crystallization Communications F65 (7), pp. 684 - 687 (2009)
45.
Journal Article
Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: The Role of Lipids for the Functional Integrity of Porin: An FTIR Study Using Lipid and Protein Reporter Groups. Biochemistry 47, pp. 12126 - 12134 (2008)
46.
Journal Article
Stieglitz, B.; Bee, C.; Schwarz, D.; Yildiz, Ö.; Moshnikova, A.; Khokhlatchev, A.; Herrmann, C.: Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II. The EMBO Journal 27 (14), pp. 1995 - 2005 (2008)
47.
Journal Article
Yildiz, Ö.; Kalthoff, C.; Raunser, S.; Kühlbrandt, W.: Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake. The EMBO Journal 26 (2), pp. 589 - 599 (2007)
48.
Journal Article
Yildiz, O.; Vinothkumar, K. R.; Goswami, P.; Kühlbrandt, W.: Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation. The EMBO Journal 25, pp. 3702 - 3713 (2006)

Book Chapter (1)

49.
Book Chapter
Köster, S.; van Pee, K.; Yildiz, Ö.: Purification, Refolding, and Crystallization of the Outer Membrane Protein OmpG from Escherichia coli. In: Methods in Enzymology, Vol. 557, pp. 149 - 166 (Ed. Shukla, A. K.). Academic Press, New York, NY (2015)
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